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Chlorine in PDB 3g1x: Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate

Enzymatic activity of Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate

All present enzymatic activity of Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate:
4.1.1.23;

Protein crystallography data

The structure of Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate, PDB code: 3g1x was solved by A.A.Fedorov, E.V.Fedorov, K.K.Chan, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.90 / 1.55
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 56.419, 56.419, 127.508, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 20.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate (pdb code 3g1x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate, PDB code: 3g1x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3g1x

Go back to Chlorine Binding Sites List in 3g1x
Chlorine binding site 1 out of 2 in the Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl231

b:16.5
occ:1.00
NZ A:LYS72 3.1 20.2 1.0
NZ A:LYS42 3.2 13.2 1.0
C6 A:U229 3.5 13.7 1.0
CD1 A:ILE96 3.6 13.8 1.0
CE A:LYS42 3.6 12.9 1.0
CA A:GLY70 3.6 12.6 1.0
CD A:LYS42 3.7 12.1 1.0
O A:GLY70 3.7 15.5 1.0
CD A:LYS72 3.9 19.8 1.0
CG A:LYS72 3.9 18.4 1.0
C1' A:U229 3.9 12.4 1.0
C A:GLY70 4.0 13.2 1.0
CE A:LYS72 4.0 19.6 1.0
N1 A:U229 4.2 12.7 1.0
C5 A:U229 4.4 13.8 1.0
CG2 A:ILE96 4.6 12.5 1.0
O4' A:U229 4.6 12.3 1.0
CB A:ILE96 4.7 11.8 1.0
CG1 A:ILE96 4.7 14.0 1.0
CG A:LYS42 4.7 12.0 1.0
O2' A:U229 4.8 15.2 1.0
C2' A:U229 4.9 13.4 1.0
N A:GLY70 5.0 12.4 1.0

Chlorine binding site 2 out of 2 in 3g1x

Go back to Chlorine Binding Sites List in 3g1x
Chlorine binding site 2 out of 2 in the Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Mutant D70G of Orotidine 5'- Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl229

b:16.1
occ:1.00
NZ B:LYS72 3.1 20.8 1.0
NZ B:LYS42 3.1 12.8 1.0
C6 B:U230 3.5 13.1 1.0
CD1 B:ILE96 3.6 13.5 1.0
CE B:LYS42 3.6 13.7 1.0
CA B:GLY70 3.6 12.3 1.0
CD B:LYS42 3.7 11.9 1.0
O B:GLY70 3.7 15.5 1.0
CD B:LYS72 3.8 18.2 1.0
CG B:LYS72 3.8 16.8 1.0
C B:GLY70 4.0 13.4 1.0
C1' B:U230 4.0 12.1 1.0
CE B:LYS72 4.0 18.5 1.0
N1 B:U230 4.3 12.1 1.0
C5 B:U230 4.4 13.6 1.0
CG2 B:ILE96 4.5 12.1 1.0
O4' B:U230 4.6 11.4 1.0
CB B:ILE96 4.6 11.4 1.0
CG1 B:ILE96 4.6 13.6 1.0
CG B:LYS42 4.7 11.7 1.0
O2' B:U230 4.9 14.8 1.0
C2' B:U230 5.0 13.1 1.0
N B:GLY70 5.0 12.1 1.0

Reference:

K.K.Chan, B.M.Wood, A.A.Fedorov, E.V.Fedorov, H.J.Imker, T.L.Amyes, J.P.Richard, S.C.Almo, J.A.Gerlt. Mechanism of the Orotidine 5'-Monophosphate Decarboxylase-Catalyzed Reaction: Evidence For Substrate Destabilization. Biochemistry V. 48 5518 2009.
ISSN: ISSN 0006-2960
PubMed: 19435314
DOI: 10.1021/BI900623R
Page generated: Sat Jul 20 19:55:53 2024

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