Chlorine in PDB 3g6z: Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
Enzymatic activity of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
All present enzymatic activity of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors:
3.4.23.15;
Protein crystallography data
The structure of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors, PDB code: 3g6z
was solved by
O.Bezencon,
D.Bur,
L.Prade,
T.Weller,
C.Boss,
W.Fischli,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.503,
94.751,
119.832,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.5 /
25.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
(pdb code 3g6z). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors, PDB code: 3g6z:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3g6z
Go back to
Chlorine Binding Sites List in 3g6z
Chlorine binding site 1 out
of 4 in the Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl342
b:51.4
occ:1.00
|
CL9
|
A:A7T342
|
0.0
|
51.4
|
1.0
|
C6
|
A:A7T342
|
1.8
|
51.3
|
1.0
|
C10
|
A:A7T342
|
2.8
|
52.0
|
1.0
|
C3
|
A:A7T342
|
2.9
|
50.5
|
1.0
|
O5
|
A:A7T342
|
3.1
|
48.4
|
1.0
|
CE2
|
A:PHE119
|
3.5
|
44.2
|
1.0
|
CG2
|
A:VAL127
|
3.6
|
32.0
|
1.0
|
C31
|
A:A7T342
|
3.6
|
36.0
|
1.0
|
C32
|
A:A7T342
|
3.7
|
35.3
|
1.0
|
CD2
|
A:PHE119
|
3.7
|
44.2
|
1.0
|
C8
|
A:A7T342
|
3.8
|
45.0
|
1.0
|
C14
|
A:A7T342
|
3.8
|
39.2
|
1.0
|
CE2
|
A:PHE124
|
3.9
|
28.4
|
1.0
|
O13
|
A:A7T342
|
3.9
|
40.6
|
1.0
|
C16
|
A:A7T342
|
3.9
|
39.9
|
1.0
|
C7
|
A:A7T342
|
4.1
|
51.0
|
1.0
|
C40
|
A:A7T342
|
4.1
|
35.5
|
1.0
|
N27
|
A:A7T342
|
4.1
|
35.9
|
1.0
|
C12
|
A:A7T342
|
4.2
|
41.7
|
1.0
|
C2
|
A:A7T342
|
4.2
|
51.7
|
1.0
|
C34
|
A:A7T342
|
4.2
|
35.6
|
1.0
|
C15
|
A:A7T342
|
4.3
|
38.3
|
1.0
|
CZ
|
A:PHE124
|
4.3
|
29.1
|
1.0
|
C18
|
A:A7T342
|
4.5
|
39.6
|
1.0
|
C4
|
A:A7T342
|
4.7
|
51.2
|
1.0
|
C36
|
A:A7T342
|
4.7
|
35.5
|
1.0
|
CZ
|
A:PHE119
|
4.8
|
44.7
|
1.0
|
C17
|
A:A7T342
|
4.8
|
36.8
|
1.0
|
C37
|
A:A7T342
|
4.9
|
35.4
|
1.0
|
C19
|
A:A7T342
|
5.0
|
38.4
|
1.0
|
C35
|
A:A7T342
|
5.0
|
36.2
|
1.0
|
CB
|
A:VAL127
|
5.0
|
30.4
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3g6z
Go back to
Chlorine Binding Sites List in 3g6z
Chlorine binding site 2 out
of 4 in the Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl342
b:52.2
occ:1.00
|
CL1
|
A:A7T342
|
0.0
|
52.2
|
1.0
|
C2
|
A:A7T342
|
1.8
|
51.7
|
1.0
|
C4
|
A:A7T342
|
2.7
|
51.2
|
1.0
|
C3
|
A:A7T342
|
2.9
|
50.5
|
1.0
|
O5
|
A:A7T342
|
3.2
|
48.4
|
1.0
|
CG2
|
A:VAL111
|
3.4
|
43.4
|
1.0
|
C8
|
A:A7T342
|
3.7
|
45.0
|
1.0
|
C
|
A:VAL46
|
3.7
|
37.8
|
1.0
|
N
|
A:PRO47
|
3.8
|
38.2
|
1.0
|
CA
|
A:VAL46
|
3.8
|
37.0
|
1.0
|
CB
|
A:TRP45
|
3.9
|
37.7
|
1.0
|
CB
|
A:VAL111
|
3.9
|
43.3
|
1.0
|
N
|
A:VAL46
|
4.0
|
36.2
|
1.0
|
O
|
A:ASP125
|
4.0
|
32.8
|
1.0
|
C
|
A:TRP45
|
4.0
|
36.6
|
1.0
|
CD
|
A:PRO47
|
4.0
|
38.1
|
1.0
|
CG
|
A:PRO47
|
4.0
|
38.2
|
1.0
|
C7
|
A:A7T342
|
4.0
|
51.0
|
1.0
|
O
|
A:TRP45
|
4.2
|
36.1
|
1.0
|
O
|
A:VAL46
|
4.2
|
38.4
|
1.0
|
C6
|
A:A7T342
|
4.2
|
51.3
|
1.0
|
CA
|
A:PRO47
|
4.4
|
38.2
|
1.0
|
SD
|
A:MET114
|
4.5
|
49.4
|
1.0
|
CA
|
A:GLY126
|
4.5
|
32.3
|
1.0
|
CG1
|
A:VAL111
|
4.5
|
43.0
|
1.0
|
CA
|
A:TRP45
|
4.6
|
36.2
|
1.0
|
C10
|
A:A7T342
|
4.6
|
52.0
|
1.0
|
CB
|
A:PRO47
|
4.7
|
38.6
|
1.0
|
CG
|
A:TRP45
|
4.9
|
39.1
|
1.0
|
C
|
A:ASP125
|
5.0
|
32.7
|
1.0
|
C12
|
A:A7T342
|
5.0
|
41.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3g6z
Go back to
Chlorine Binding Sites List in 3g6z
Chlorine binding site 3 out
of 4 in the Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl342
b:43.5
occ:1.00
|
CL9
|
B:A7T342
|
0.0
|
43.5
|
1.0
|
C6
|
B:A7T342
|
1.8
|
40.8
|
1.0
|
C3
|
B:A7T342
|
2.8
|
39.6
|
1.0
|
C10
|
B:A7T342
|
2.8
|
39.7
|
1.0
|
O5
|
B:A7T342
|
3.0
|
37.9
|
1.0
|
CG2
|
B:VAL127
|
3.3
|
24.6
|
1.0
|
CE1
|
B:PHE119
|
3.6
|
35.2
|
1.0
|
C31
|
B:A7T342
|
3.6
|
32.2
|
1.0
|
C32
|
B:A7T342
|
3.7
|
30.1
|
1.0
|
C34
|
B:A7T342
|
3.8
|
33.3
|
1.0
|
CD1
|
B:PHE119
|
3.8
|
33.3
|
1.0
|
C8
|
B:A7T342
|
3.9
|
34.6
|
1.0
|
C14
|
B:A7T342
|
3.9
|
31.0
|
1.0
|
CE2
|
B:PHE124
|
3.9
|
24.0
|
1.0
|
C15
|
B:A7T342
|
4.0
|
29.4
|
1.0
|
O13
|
B:A7T342
|
4.0
|
32.5
|
1.0
|
C7
|
B:A7T342
|
4.1
|
40.8
|
1.0
|
C2
|
B:A7T342
|
4.1
|
41.6
|
1.0
|
N27
|
B:A7T342
|
4.1
|
31.4
|
1.0
|
C40
|
B:A7T342
|
4.2
|
27.7
|
1.0
|
C12
|
B:A7T342
|
4.3
|
34.4
|
1.0
|
C16
|
B:A7T342
|
4.4
|
28.5
|
1.0
|
CZ
|
B:PHE124
|
4.4
|
23.8
|
1.0
|
C17
|
B:A7T342
|
4.5
|
31.8
|
1.0
|
C4
|
B:A7T342
|
4.6
|
41.1
|
1.0
|
C36
|
B:A7T342
|
4.7
|
29.4
|
1.0
|
CB
|
B:VAL127
|
4.7
|
22.3
|
1.0
|
CZ
|
B:PHE119
|
4.9
|
32.3
|
1.0
|
C37
|
B:A7T342
|
4.9
|
28.9
|
1.0
|
C35
|
B:A7T342
|
4.9
|
33.5
|
1.0
|
C18
|
B:A7T342
|
4.9
|
29.8
|
1.0
|
C19
|
B:A7T342
|
5.0
|
29.6
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3g6z
Go back to
Chlorine Binding Sites List in 3g6z
Chlorine binding site 4 out
of 4 in the Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl342
b:42.3
occ:1.00
|
CL1
|
B:A7T342
|
0.0
|
42.3
|
1.0
|
C2
|
B:A7T342
|
1.8
|
41.6
|
1.0
|
C4
|
B:A7T342
|
2.7
|
41.1
|
1.0
|
C3
|
B:A7T342
|
2.8
|
39.6
|
1.0
|
O5
|
B:A7T342
|
3.1
|
37.9
|
1.0
|
C8
|
B:A7T342
|
3.4
|
34.6
|
1.0
|
CG2
|
B:VAL111
|
3.4
|
23.3
|
1.0
|
C
|
B:VAL46
|
3.7
|
24.9
|
1.0
|
N
|
B:PRO47
|
3.8
|
24.6
|
1.0
|
CB
|
B:VAL111
|
3.9
|
24.8
|
1.0
|
CA
|
B:VAL46
|
3.9
|
25.1
|
1.0
|
C
|
B:TRP45
|
4.0
|
26.6
|
1.0
|
CB
|
B:TRP45
|
4.0
|
27.6
|
1.0
|
O
|
B:TRP45
|
4.0
|
26.2
|
1.0
|
O
|
B:ASP125
|
4.0
|
24.1
|
1.0
|
C7
|
B:A7T342
|
4.0
|
40.8
|
1.0
|
N
|
B:VAL46
|
4.0
|
25.7
|
1.0
|
O
|
B:VAL46
|
4.1
|
25.0
|
1.0
|
CD
|
B:PRO47
|
4.1
|
25.4
|
1.0
|
C6
|
B:A7T342
|
4.1
|
40.8
|
1.0
|
CG
|
B:PRO47
|
4.2
|
25.5
|
1.0
|
SD
|
B:MET114
|
4.4
|
34.5
|
1.0
|
CA
|
B:PRO47
|
4.5
|
25.0
|
1.0
|
CA
|
B:GLY126
|
4.5
|
23.1
|
1.0
|
CG1
|
B:VAL111
|
4.5
|
25.0
|
1.0
|
C10
|
B:A7T342
|
4.6
|
39.7
|
1.0
|
CA
|
B:TRP45
|
4.6
|
26.5
|
1.0
|
C12
|
B:A7T342
|
4.8
|
34.4
|
1.0
|
CB
|
B:PRO47
|
4.9
|
24.9
|
1.0
|
CE
|
B:MET114
|
4.9
|
36.6
|
1.0
|
|
Reference:
O.Bezencon,
D.Bur,
T.Weller,
S.Richard-Bildstein,
L.Remen,
T.Sifferlen,
O.Corminboeuf,
C.Grisostomi,
C.Boss,
L.Prade,
S.Delahaye,
A.Treiber,
P.Strickner,
C.Binkert,
P.Hess,
B.Steiner,
W.Fischli.
Design and Preparation of Potent, Nonpeptidic, Bioavailable Renin Inhibitors J.Med.Chem. V. 52 3689 2009.
ISSN: ISSN 0022-2623
PubMed: 19358611
DOI: 10.1021/JM900022F
Page generated: Sat Jul 20 20:04:32 2024
|