Atomistry » Chlorine » PDB 3g72-3gjd » 3gc2
Atomistry »
  Chlorine »
    PDB 3g72-3gjd »
      3gc2 »

Chlorine in PDB 3gc2: 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid

Enzymatic activity of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid

All present enzymatic activity of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid:
4.2.1.113;

Protein crystallography data

The structure of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid, PDB code: 3gc2 was solved by G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, S.N.Peterson, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.07 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 149.968, 149.968, 39.120, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 18.5

Other elements in 3gc2:

The structure of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid (pdb code 3gc2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid, PDB code: 3gc2:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3gc2

Go back to Chlorine Binding Sites List in 3gc2
Chlorine binding site 1 out of 3 in the 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl323

b:45.5
occ:1.00
 NH1 A:ARG8 2.9 20.7 0.3
NE2 A:GLN60 3.1 21.1 1.0
NH2 A:ARG8 3.4 14.8 0.7
O A:HOH444 3.4 40.3 1.0
CZ A:ARG8 4.2 19.5 0.3
CD A:GLN60 4.3 20.4 1.0
CZ A:ARG8 4.3 17.3 0.7
NH1 A:ARG8 4.4 17.5 0.7
OE1 A:GLN60 4.6 22.9 1.0
NH2 A:ARG8 4.8 20.3 0.3

Chlorine binding site 2 out of 3 in 3gc2

Go back to Chlorine Binding Sites List in 3gc2
Chlorine binding site 2 out of 3 in the 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl324

b:55.5
occ:0.70
 CL A:CL324 0.0 55.5 0.7
CL A:CL324 2.2 44.0 0.3
O A:HOH438 3.0 30.2 1.0
NE A:ARG313 3.2 35.8 1.0
N A:ARG313 3.2 26.4 1.0
NH2 A:ARG313 3.6 37.6 1.0
CA A:LYS312 3.7 26.8 1.0
O A:HOH525 3.8 48.9 1.0
CB A:LYS312 3.8 27.4 1.0
CZ A:ARG313 3.9 37.6 1.0
CB A:ARG313 4.0 27.2 1.0
C A:LYS312 4.0 26.0 1.0
CG A:ARG313 4.0 29.2 1.0
CD A:ARG313 4.2 31.2 1.0
CA A:ARG313 4.2 26.7 1.0
CG A:LYS312 4.3 30.1 1.0
CG2 A:ILE300 4.3 29.0 1.0
CA A:ILE300 4.4 26.0 1.0
OE1 A:GLU314 4.4 36.9 1.0
CG1 A:ILE300 4.4 30.6 1.0
O A:ILE300 4.5 25.8 1.0
CE A:LYS312 4.6 36.0 1.0
CB A:ILE300 4.6 27.9 1.0
C A:ILE300 5.0 25.8 1.0

Chlorine binding site 3 out of 3 in 3gc2

Go back to Chlorine Binding Sites List in 3gc2
Chlorine binding site 3 out of 3 in the 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl324

b:44.0
occ:0.30
 CL A:CL324 0.0 44.0 0.3
CL A:CL324 2.2 55.5 0.7
O A:ILE300 3.1 25.8 1.0
CA A:ILE300 3.6 26.0 1.0
C A:ILE300 3.8 25.8 1.0
CA A:LYS312 3.8 26.8 1.0
O A:HOH525 3.9 48.9 1.0
CG A:LYS312 3.9 30.1 1.0
CB A:LYS312 4.1 27.4 1.0
O A:LEU311 4.3 26.7 1.0
N A:ILE300 4.4 24.1 1.0
O A:HOH578 4.4 41.6 1.0
O A:HOH438 4.4 30.2 1.0
CG2 A:ILE300 4.5 29.0 1.0
N A:ARG313 4.5 26.4 1.0
CB A:ILE300 4.5 27.9 1.0
C A:LYS312 4.7 26.0 1.0
N A:LYS312 4.7 25.8 1.0
C A:LEU311 4.9 25.7 1.0
CG1 A:ILE300 4.9 30.6 1.0
CE A:LYS312 4.9 36.0 1.0
CD A:LYS312 4.9 34.8 1.0

Reference:

G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, S.N.Peterson, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.85 Angstrom Crystal Structure of O-Succinylbenzoate Synthase From Salmonella Typhimurium in Complex with Succinic Acid To Be Published.
Page generated: Sat Jul 20 20:13:06 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy