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Chlorine in PDB 3ggp: Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+

Protein crystallography data

The structure of Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+, PDB code: 3ggp was solved by W.Sun, D.Shahinas, M.S.Kimber, D.Christendat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.45 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.061, 92.361, 163.830, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+ (pdb code 3ggp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+, PDB code: 3ggp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3ggp

Go back to Chlorine Binding Sites List in 3ggp
Chlorine binding site 1 out of 2 in the Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl313

b:42.2
occ:1.00
O C:HOH1009 3.1 44.9 1.0
N A:GLY242 3.1 54.0 1.0
NZ C:LYS169 3.3 56.0 1.0
N A:PRO241 3.6 55.0 1.0
CA A:GLY242 3.7 53.0 1.0
CA A:TYR240 3.7 52.3 1.0
CG2 C:ILE149 3.7 50.5 1.0
CD A:PRO241 3.7 54.4 1.0
C A:TYR240 3.7 53.5 1.0
CD C:LYS169 3.8 53.8 1.0
O A:LYS239 4.1 52.0 1.0
CE C:LYS169 4.1 53.8 1.0
C A:PRO241 4.2 55.4 1.0
CG C:LYS169 4.3 51.9 1.0
CB C:ILE149 4.3 51.8 1.0
CG A:PRO241 4.4 54.8 1.0
CA A:PRO241 4.5 54.9 1.0
O A:TYR240 4.5 54.9 1.0
CB A:TYR240 4.5 51.6 1.0
CB C:LYS169 4.6 53.1 1.0
C A:GLY242 4.7 54.3 1.0
N A:TYR240 4.7 51.5 1.0
CD2 A:TYR240 4.7 50.0 1.0
O C:ILE149 4.8 52.5 1.0
O C:HOH1076 4.8 66.9 1.0
C A:LYS239 4.8 52.0 1.0

Chlorine binding site 2 out of 2 in 3ggp

Go back to Chlorine Binding Sites List in 3ggp
Chlorine binding site 2 out of 2 in the Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Prephenate Dehydrogenase From A. Aeolicus in Complex with Hydroxyphenyl Propionate and Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl314

b:43.4
occ:1.00
O B:HOH1420 2.9 46.0 1.0
N D:GLY242 3.2 46.9 1.0
NZ B:LYS169 3.3 51.3 1.0
CA D:GLY242 3.7 47.0 1.0
CG2 B:ILE149 3.7 50.9 1.0
CD D:PRO241 3.7 49.1 1.0
N D:PRO241 3.8 47.4 1.0
CA D:TYR240 3.9 48.0 1.0
C D:TYR240 3.9 47.6 1.0
CD B:LYS169 3.9 54.5 1.0
CG B:LYS169 4.2 52.1 1.0
CE B:LYS169 4.2 54.1 1.0
CB B:ILE149 4.3 50.6 1.0
O D:LYS239 4.3 47.6 1.0
C D:PRO241 4.3 48.6 1.0
CG D:PRO241 4.4 47.1 1.0
CB B:LYS169 4.5 52.8 1.0
CB D:TYR240 4.5 48.6 1.0
CA D:PRO241 4.6 47.3 1.0
O D:TYR240 4.6 50.0 1.0
C D:GLY242 4.7 48.4 1.0
CD2 D:TYR240 4.7 44.5 1.0
O B:ILE149 4.8 51.2 1.0
N D:TYR240 5.0 47.6 1.0

Reference:

W.Sun, D.Shahinas, J.Bonvin, W.Hou, M.S.Kimber, J.Turnbull, D.Christendat. The Crystal Structure of Aquifex Aeolicus Prephenate Dehydrogenase Reveals the Mode of Tyrosine Inhibition. J.Biol.Chem. V. 284 13223 2009.
ISSN: ISSN 0021-9258
PubMed: 19279014
DOI: 10.1074/JBC.M806272200
Page generated: Sat Jul 20 20:20:22 2024

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