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Chlorine in PDB 3gjd: Crystal Structure of Leut with Bound Og

Protein crystallography data

The structure of Crystal Structure of Leut with Bound Og, PDB code: 3gjd was solved by A.M.L.Winther, M.Quick, J.A.Javitch, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.55 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.510, 86.570, 81.290, 90.00, 95.63, 90.00
R / Rfree (%) 16.9 / 19.9

Other elements in 3gjd:

The structure of Crystal Structure of Leut with Bound Og also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Leut with Bound Og (pdb code 3gjd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Leut with Bound Og, PDB code: 3gjd:

Chlorine binding site 1 out of 1 in 3gjd

Go back to Chlorine Binding Sites List in 3gjd
Chlorine binding site 1 out of 1 in the Crystal Structure of Leut with Bound Og


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Leut with Bound Og within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl518

b:45.5
occ:1.00
OG A:SER165 3.0 31.1 1.0
CB A:SER165 3.6 31.4 1.0
O A:HOH537 3.6 34.6 1.0
CD1 A:TYR151 3.7 28.0 1.0
NZ A:LYS121 3.9 68.3 1.0
CB A:PHE167 4.0 28.7 1.0
CD2 A:PHE167 4.1 32.5 1.0
CE A:LYS121 4.1 60.1 1.0
CA A:TYR151 4.3 20.5 1.0
O A:HOH557 4.4 34.6 1.0
CE1 A:TYR151 4.4 27.2 1.0
CG A:TYR151 4.5 24.0 1.0
CD A:LYS121 4.5 45.9 1.0
CG A:PHE167 4.5 29.9 1.0
CB A:TYR151 4.5 23.9 1.0
N A:TYR151 4.9 25.1 1.0
O A:SER150 4.9 26.5 1.0
N A:ALA168 4.9 24.7 1.0

Reference:

M.Quick, A.M.L.Winther, L.Shi, P.Nissen, H.Weinstein, J.A.Javitch. Binding of An Octylglucoside Detergent Molecule in the Second Substrate (S2) Site of Leut Establishes An Inhibitor-Bound Conformation Proc.Natl.Acad.Sci.Usa V. 106 5563 2009.
ISSN: ISSN 0027-8424
PubMed: 19307590
DOI: 10.1073/PNAS.0811322106
Page generated: Sat Dec 12 09:44:21 2020

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