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Chlorine in PDB 3gl1: Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae

Protein crystallography data

The structure of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae, PDB code: 3gl1 was solved by J.Osipiuk, H.Li, M.Bargassa, C.Sahi, E.A.Craig, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.70 / 1.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 76.543, 54.504, 90.623, 90.00, 104.36, 90.00
R / Rfree (%) 16.4 / 21.8

Other elements in 3gl1:

The structure of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae (pdb code 3gl1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae, PDB code: 3gl1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3gl1

Go back to Chlorine Binding Sites List in 3gl1
Chlorine binding site 1 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:25.8
occ:1.00
 OG1 A:THR17 2.9 17.7 0.4
N A:THR17 3.2 14.3 1.0
O A:HOH602 3.2 13.7 1.0
O A:HOH546 3.3 23.6 1.0
N A:TYR18 3.4 13.8 1.0
N A:THR16 3.6 13.9 1.0
O A:TYR18 3.8 15.9 1.0
CB A:THR17 3.9 14.3 0.6
CA A:THR17 3.9 14.4 0.6
CA A:THR17 3.9 14.8 0.4
O A:HOH604 3.9 29.5 1.0
CB A:THR17 3.9 14.8 0.4
CL A:CL710 4.1 36.1 1.0
C A:THR17 4.1 14.3 1.0
C A:GLY15 4.1 13.6 1.0
CA A:GLY15 4.1 13.7 1.0
C A:THR16 4.2 14.7 1.0
CA A:THR16 4.3 14.5 1.0
OG1 A:THR17 4.3 14.0 0.6
CA A:TYR18 4.3 14.1 1.0
O A:HOH632 4.3 15.9 1.0
O A:HOH548 4.4 12.9 1.0
CB A:THR16 4.4 15.6 1.0
CB A:TYR18 4.5 13.5 1.0
CG2 A:THR17 4.5 14.9 0.4
C A:TYR18 4.5 14.1 1.0
CD2 A:TYR18 4.9 19.1 1.0
O A:HOH440 4.9 14.7 1.0
MG A:MG701 4.9 20.4 1.0
O A:GLY15 5.0 14.0 1.0
OG1 A:THR16 5.0 12.1 1.0

Chlorine binding site 2 out of 7 in 3gl1

Go back to Chlorine Binding Sites List in 3gl1
Chlorine binding site 2 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:19.8
occ:1.00
 O B:HOH439 3.1 14.2 1.0
N A:ASP288 3.2 14.1 1.0
O A:HOH393 3.2 11.4 1.0
O B:HOH659 3.2 19.7 1.0
NH2 A:ARG265 3.5 9.0 1.0
CB A:ASP288 3.8 15.2 1.0
CA A:VAL287 3.9 14.5 1.0
C A:VAL287 4.0 15.4 1.0
CA A:ASP288 4.1 14.9 1.0
O B:HOH398 4.3 23.6 1.0
CG1 A:VAL287 4.4 12.9 1.0
O A:GLU286 4.4 15.6 1.0
CD B:ARG345 4.4 18.2 1.0
O A:HOH519 4.5 22.5 1.0
O A:ASP288 4.6 14.3 1.0
O B:SER278 4.6 16.3 1.0
O B:HOH474 4.7 8.7 1.0
CB A:VAL287 4.7 14.1 1.0
CZ A:ARG265 4.7 12.7 1.0
N A:VAL287 4.8 15.9 1.0
CB B:SER278 4.9 14.4 1.0
O B:HOH545 4.9 18.6 1.0
C A:ASP288 4.9 14.6 1.0
C A:GLU286 4.9 15.7 1.0
CB B:ARG345 4.9 15.2 1.0
CG B:ARG345 5.0 16.4 1.0
NE B:ARG345 5.0 15.7 1.0

Chlorine binding site 3 out of 7 in 3gl1

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Chlorine binding site 3 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl710

b:36.1
occ:1.00
 O A:HOH548 2.9 12.9 1.0
OG1 A:THR16 3.0 12.1 1.0
NZ A:LYS73 3.0 20.4 1.0
N A:THR16 3.4 13.9 1.0
O A:HOH440 3.6 14.7 1.0
CB A:THR16 3.8 15.6 1.0
CE A:LYS73 4.0 19.4 1.0
O A:HOH675 4.0 36.8 1.0
CA A:GLY15 4.1 13.7 1.0
CL A:CL707 4.1 25.8 1.0
CA A:THR16 4.2 14.5 1.0
OG1 A:THR207 4.2 22.6 1.0
C A:GLY15 4.2 13.6 1.0
CD A:LYS73 4.3 16.4 1.0
OE1 A:GLU177 4.3 18.6 1.0
CG2 A:THR207 4.3 24.7 1.0
MG A:MG701 4.4 20.4 1.0
O A:HOH602 4.5 13.7 1.0
OE2 A:GLU177 4.5 20.4 1.0
O A:HOH546 4.7 23.6 1.0
CB A:THR207 4.8 22.9 1.0
CD A:GLU177 4.8 19.5 1.0

Chlorine binding site 4 out of 7 in 3gl1

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Chlorine binding site 4 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl711

b:33.1
occ:1.00
 NH2 B:ARG345 3.2 15.6 1.0
ND2 B:ASN367 3.3 16.3 1.0
NE A:ARG261 3.3 26.6 0.6
CZ A:ARG261 3.5 25.9 0.6
CD A:ARG265 3.6 12.4 1.0
CD A:ARG261 3.7 24.1 0.4
NE A:ARG265 3.7 13.6 1.0
NH1 B:ARG345 3.7 16.3 1.0
NH2 A:ARG261 3.7 25.3 0.6
CZ A:ARG265 3.8 12.7 1.0
NH1 A:ARG265 3.8 15.1 1.0
CD A:ARG261 3.9 24.8 0.6
CZ B:ARG345 3.9 16.3 1.0
NH1 A:ARG261 4.1 25.9 0.6
CB B:ASN367 4.1 14.3 1.0
CG B:ASN367 4.2 15.3 1.0
NE A:ARG261 4.5 25.2 0.4
CG A:ARG261 4.5 22.5 0.4
O A:HOH469 4.5 18.6 1.0
CG A:ARG261 4.5 22.9 0.6
NH2 A:ARG265 4.5 9.0 1.0
O A:HOH606 4.6 15.6 1.0
NH1 A:ARG261 4.7 25.4 0.4
O B:HOH471 4.8 15.8 1.0
CG A:ARG265 4.8 13.6 1.0
CA B:ASN367 4.8 13.9 1.0
CZ A:ARG261 4.9 25.1 0.4

Chlorine binding site 5 out of 7 in 3gl1

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Chlorine binding site 5 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:20.6
occ:1.00
 OG1 B:THR16 2.9 10.3 1.0
O B:HOH540 3.1 14.0 1.0
NZ B:LYS73 3.1 12.8 1.0
N B:THR16 3.3 12.5 1.0
OG1 B:THR207 3.5 17.1 1.0
O B:HOH642 3.6 16.9 1.0
CB B:THR16 3.6 11.8 1.0
O B:HOH438 3.7 14.2 1.0
O B:HOH426 3.8 9.4 1.0
CE B:LYS73 3.9 15.5 1.0
CA B:THR16 4.0 11.8 1.0
CD B:LYS73 4.1 14.3 1.0
CA B:GLY15 4.1 12.3 1.0
C B:GLY15 4.2 12.3 1.0
CG2 B:THR207 4.3 12.4 1.0
C3 B:GOL712 4.3 18.4 1.0
OE1 B:GLU177 4.3 16.8 1.0
CL B:CL705 4.4 20.6 1.0
MG B:MG702 4.5 15.8 1.0
CB B:THR207 4.5 16.6 1.0
O B:HOH478 4.5 17.5 1.0
O B:HOH655 4.6 14.6 1.0
OE2 B:GLU177 4.7 15.9 1.0
CD B:GLU177 4.9 14.4 1.0
O3 B:GOL712 4.9 22.6 1.0
CG B:PRO149 5.0 15.3 1.0

Chlorine binding site 6 out of 7 in 3gl1

Go back to Chlorine Binding Sites List in 3gl1
Chlorine binding site 6 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl705

b:20.6
occ:1.00
 O B:HOH438 3.0 14.2 1.0
OG1 B:THR17 3.1 17.5 1.0
O B:HOH616 3.1 32.9 1.0
N B:THR17 3.1 12.0 1.0
O B:HOH655 3.2 14.6 1.0
N B:TYR18 3.5 12.8 1.0
N B:THR16 3.6 12.5 1.0
CA B:THR17 3.8 12.9 1.0
CB B:THR17 3.9 13.7 1.0
N B:GLY205 3.9 15.1 1.0
O B:TYR18 4.1 15.0 1.0
C B:GLY15 4.1 12.3 1.0
O B:HOH540 4.1 14.0 1.0
C B:THR16 4.1 12.2 1.0
C B:THR17 4.2 13.8 1.0
CA B:THR16 4.2 11.8 1.0
CA B:GLY15 4.2 12.3 1.0
CG2 B:THR17 4.3 12.7 1.0
O B:HOH472 4.3 19.2 1.0
CB B:THR16 4.3 11.8 1.0
CL B:CL704 4.4 20.6 1.0
CA B:TYR18 4.5 14.6 1.0
CA B:GLY205 4.6 14.8 1.0
CB B:TYR18 4.7 15.2 1.0
MG B:MG702 4.7 15.8 1.0
CA B:GLY204 4.8 14.9 1.0
C B:TYR18 4.8 15.2 1.0
C B:GLY204 4.8 13.9 1.0
N B:GLY206 4.8 13.6 1.0
O B:HOH604 4.9 20.9 1.0
O B:HOH426 4.9 9.4 1.0
O B:GLY15 5.0 13.5 1.0

Chlorine binding site 7 out of 7 in 3gl1

Go back to Chlorine Binding Sites List in 3gl1
Chlorine binding site 7 out of 7 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl709

b:30.7
occ:1.00
 O B:HOH461 2.9 17.2 1.0
O B:HOH396 3.1 37.6 1.0
N B:ASN176 3.2 15.3 1.0
CB B:ILE175 3.6 17.9 1.0
CA B:ILE175 3.6 18.4 1.0
ND2 B:ASN176 3.8 13.2 1.0
C B:ILE175 3.9 17.2 1.0
CG B:ASN176 4.0 15.9 1.0
CG2 B:ILE175 4.0 18.9 1.0
CG2 B:THR179 4.1 18.5 1.0
CB B:ASN176 4.1 14.7 1.0
CB B:THR179 4.2 17.9 1.0
OG1 B:THR179 4.2 17.6 1.0
CA B:ASN176 4.3 14.7 1.0
O B:ILE174 4.6 20.6 1.0
OD1 B:ASN176 4.7 15.8 1.0
CG1 B:ILE175 4.8 21.0 1.0
N B:ILE175 4.9 17.5 1.0

Reference:

J.Osipiuk, H.Li, M.Bargassa, C.Sahi, E.A.Craig, A.Joachimiak. Crystal Structure of Atpase Domain of SSB1 Chaperone, Member of the HSP70 Family From Saccharomyces Cerevisiae. To Be Published.
Page generated: Sat Jul 20 20:22:07 2024

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