Chlorine in PDB 3hhl: Crystal Structure of Methylated RPA0582 Protein
Protein crystallography data
The structure of Crystal Structure of Methylated RPA0582 Protein, PDB code: 3hhl
was solved by
P.Sledz,
E.Niedzialkowska,
M.Chruszcz,
P.Porebski,
V.Yim,
M.Kudritska,
M.D.Zimmerman,
E.Evdokimova,
A.Savchenko,
A.Edwards,
A.Joachimiak,
W.Minor,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.17 /
2.65
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
193.012,
193.012,
117.965,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.8 /
20.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Methylated RPA0582 Protein
(pdb code 3hhl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Methylated RPA0582 Protein, PDB code: 3hhl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3hhl
Go back to
Chlorine Binding Sites List in 3hhl
Chlorine binding site 1 out
of 4 in the Crystal Structure of Methylated RPA0582 Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Methylated RPA0582 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl145
b:54.6
occ:1.00
|
OH
|
A:TYR94
|
3.2
|
49.1
|
1.0
|
O19
|
A:2PE148
|
3.2
|
0.3
|
1.0
|
ND2
|
A:ASN28
|
3.2
|
34.9
|
1.0
|
C18
|
A:2PE148
|
3.4
|
0.3
|
1.0
|
C17
|
A:2PE148
|
3.5
|
0.7
|
1.0
|
CB
|
A:MSE26
|
3.7
|
32.5
|
1.0
|
C20
|
A:2PE148
|
3.7
|
0.3
|
1.0
|
CE1
|
A:TYR94
|
3.7
|
39.4
|
1.0
|
CB
|
A:ALA92
|
3.7
|
31.4
|
1.0
|
CZ
|
A:TYR94
|
3.9
|
41.8
|
1.0
|
CG
|
A:ASN28
|
4.1
|
34.1
|
1.0
|
OD1
|
A:ASN28
|
4.1
|
36.1
|
1.0
|
CD1
|
A:LEU125
|
4.1
|
34.6
|
1.0
|
CE1
|
A:PHE100
|
4.1
|
34.3
|
1.0
|
CG
|
A:MSE26
|
4.1
|
34.3
|
1.0
|
O16
|
A:2PE148
|
4.7
|
0.3
|
1.0
|
CE2
|
A:PHE90
|
4.7
|
31.5
|
1.0
|
O
|
A:MSE26
|
4.7
|
30.5
|
1.0
|
CZ
|
A:PHE100
|
4.9
|
31.7
|
1.0
|
CD2
|
A:LEU125
|
5.0
|
33.0
|
1.0
|
CD1
|
A:TYR94
|
5.0
|
38.5
|
1.0
|
CD1
|
A:PHE100
|
5.0
|
35.4
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3hhl
Go back to
Chlorine Binding Sites List in 3hhl
Chlorine binding site 2 out
of 4 in the Crystal Structure of Methylated RPA0582 Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Methylated RPA0582 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl143
b:55.0
occ:1.00
|
C17
|
B:PE8148
|
3.2
|
99.8
|
1.0
|
OH
|
B:TYR94
|
3.2
|
46.9
|
1.0
|
ND2
|
B:ASN28
|
3.3
|
36.9
|
1.0
|
C15
|
B:PE8148
|
3.4
|
98.3
|
1.0
|
O16
|
B:PE8148
|
3.7
|
98.5
|
1.0
|
CB
|
B:MSE26
|
3.7
|
32.8
|
1.0
|
CB
|
B:ALA92
|
3.8
|
32.5
|
1.0
|
CE1
|
B:TYR94
|
3.9
|
38.9
|
1.0
|
OD1
|
B:ASN28
|
3.9
|
37.5
|
1.0
|
CD1
|
B:LEU125
|
4.0
|
33.8
|
1.0
|
CG
|
B:ASN28
|
4.0
|
34.8
|
1.0
|
CZ
|
B:TYR94
|
4.0
|
41.2
|
1.0
|
CE1
|
B:PHE100
|
4.1
|
33.1
|
1.0
|
C14
|
B:PE8148
|
4.1
|
98.3
|
1.0
|
CG
|
B:MSE26
|
4.2
|
33.8
|
1.0
|
C18
|
B:PE8148
|
4.5
|
0.7
|
1.0
|
O
|
B:MSE26
|
4.7
|
31.4
|
1.0
|
CE2
|
B:PHE90
|
4.7
|
33.6
|
1.0
|
CD2
|
B:LEU125
|
4.8
|
28.6
|
1.0
|
CZ
|
B:PHE100
|
4.8
|
32.6
|
1.0
|
O19
|
B:PE8148
|
5.0
|
0.2
|
1.0
|
CG
|
B:LEU125
|
5.0
|
34.4
|
1.0
|
CD1
|
B:PHE100
|
5.0
|
35.6
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3hhl
Go back to
Chlorine Binding Sites List in 3hhl
Chlorine binding site 3 out
of 4 in the Crystal Structure of Methylated RPA0582 Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Methylated RPA0582 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl144
b:55.6
occ:1.00
|
ND2
|
C:ASN28
|
3.2
|
33.1
|
1.0
|
OH
|
C:TYR94
|
3.2
|
48.4
|
1.0
|
C17
|
C:PE8148
|
3.2
|
0.1
|
1.0
|
O16
|
C:PE8148
|
3.6
|
0.1
|
1.0
|
CB
|
C:MSE26
|
3.6
|
33.4
|
1.0
|
C18
|
C:PE8148
|
3.7
|
0.0
|
1.0
|
CB
|
C:ALA92
|
3.7
|
30.9
|
1.0
|
O19
|
C:PE8148
|
3.7
|
0.8
|
1.0
|
CE1
|
C:TYR94
|
3.8
|
40.0
|
1.0
|
CD1
|
C:LEU125
|
3.9
|
36.7
|
1.0
|
CZ
|
C:TYR94
|
4.0
|
42.9
|
1.0
|
OD1
|
C:ASN28
|
4.0
|
36.7
|
1.0
|
CG
|
C:ASN28
|
4.0
|
33.2
|
1.0
|
CE1
|
C:PHE100
|
4.1
|
34.4
|
1.0
|
CG
|
C:MSE26
|
4.2
|
34.5
|
1.0
|
O
|
C:MSE26
|
4.6
|
32.8
|
1.0
|
CE2
|
C:PHE90
|
4.7
|
31.1
|
1.0
|
CD2
|
C:LEU125
|
4.8
|
34.2
|
1.0
|
C15
|
C:PE8148
|
4.9
|
0.3
|
1.0
|
CZ
|
C:PHE100
|
4.9
|
33.5
|
1.0
|
C20
|
C:PE8148
|
4.9
|
0.1
|
1.0
|
CG
|
C:LEU125
|
5.0
|
35.5
|
1.0
|
CA
|
C:MSE26
|
5.0
|
33.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3hhl
Go back to
Chlorine Binding Sites List in 3hhl
Chlorine binding site 4 out
of 4 in the Crystal Structure of Methylated RPA0582 Protein
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Methylated RPA0582 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl143
b:54.8
occ:1.00
|
O19
|
D:2PE146
|
3.2
|
0.8
|
1.0
|
OH
|
D:TYR94
|
3.2
|
47.4
|
1.0
|
ND2
|
D:ASN28
|
3.3
|
36.8
|
1.0
|
C18
|
D:2PE146
|
3.5
|
0.9
|
1.0
|
C17
|
D:2PE146
|
3.6
|
0.1
|
1.0
|
CB
|
D:MSE26
|
3.6
|
32.8
|
1.0
|
C20
|
D:2PE146
|
3.8
|
0.9
|
1.0
|
CE1
|
D:TYR94
|
3.8
|
39.5
|
1.0
|
CB
|
D:ALA92
|
3.8
|
33.6
|
1.0
|
CZ
|
D:TYR94
|
3.9
|
41.2
|
1.0
|
CD1
|
D:LEU125
|
4.0
|
34.5
|
1.0
|
OD1
|
D:ASN28
|
4.0
|
36.7
|
1.0
|
CE1
|
D:PHE100
|
4.0
|
35.2
|
1.0
|
CG
|
D:MSE26
|
4.1
|
35.1
|
1.0
|
CG
|
D:ASN28
|
4.1
|
34.7
|
1.0
|
O16
|
D:2PE146
|
4.4
|
0.1
|
1.0
|
CE2
|
D:PHE90
|
4.7
|
32.6
|
1.0
|
O
|
D:MSE26
|
4.8
|
31.9
|
1.0
|
CZ
|
D:PHE100
|
4.8
|
33.5
|
1.0
|
CD2
|
D:LEU125
|
4.9
|
32.7
|
1.0
|
CD1
|
D:PHE100
|
5.0
|
37.1
|
1.0
|
|
Reference:
P.Sledz,
E.Niedzialkowska,
M.Chruszcz,
P.Porebski,
V.Yim,
M.Kudritska,
M.D.Zimmerman,
E.Evdokimova,
A.Savchenko,
A.Edwards,
A.Joachimiak,
W.Minor.
Crystal Structure of Methylated RPA0582 Protein To Be Published.
Page generated: Sat Jul 20 20:48:58 2024
|