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Chlorine in PDB 3hjv: 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961

Protein crystallography data

The structure of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3hjv was solved by A.S.Halavaty, Z.Wawrzak, S.Anderson, T.Skarina, O.Onopriyenko, K.Kwon, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.48 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.525, 87.789, 121.957, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 19.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 (pdb code 3hjv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3hjv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 3hjv

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Chlorine binding site 1 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl328

b:34.9
occ:1.00
O B:HOH457 2.7 39.3 1.0
O B:HOH482 2.9 37.5 1.0
O A:HOH611 3.0 49.0 1.0
NE2 A:GLN16 3.2 13.0 0.6
NE2 A:GLN19 3.2 15.6 1.0
CA A:GLY17 3.8 14.6 1.0
N A:GLY17 3.9 14.7 1.0
O A:HOH684 3.9 50.5 1.0
CG A:GLN16 3.9 13.0 0.6
CD A:GLN16 4.0 11.6 0.6
CD A:GLN19 4.1 15.7 1.0
OE1 A:GLN19 4.2 14.9 1.0
O B:HOH614 4.3 32.2 0.5
C A:GLN16 4.6 14.4 0.6
O B:HOH614 4.6 21.4 0.5
C A:GLN16 4.7 14.9 0.4
O B:HOH417 4.8 29.2 1.0
O A:ASN62 4.8 15.8 1.0
OD1 A:ASN62 4.8 14.6 1.0
O A:HOH475 4.9 21.4 1.0
C A:GLY17 4.9 14.9 1.0
CG A:ASN62 4.9 13.4 1.0
CB A:GLN16 5.0 15.5 0.4

Chlorine binding site 2 out of 9 in 3hjv

Go back to Chlorine Binding Sites List in 3hjv
Chlorine binding site 2 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl329

b:47.4
occ:1.00
O A:HOH501 2.5 36.9 1.0
NZ A:LYS35 3.0 21.7 1.0
NE1 A:TRP50 3.1 13.3 1.0
O A:HOH567 3.7 31.8 1.0
CE A:LYS35 3.7 19.9 1.0
CD1 A:TRP50 4.0 13.2 1.0
CE2 A:TRP50 4.1 12.2 1.0
CD A:LYS35 4.1 15.5 1.0
CZ2 A:TRP50 4.4 13.6 1.0
O A:HOH748 4.8 51.5 1.0
OE1 A:GLU29 5.0 23.2 0.5
O A:HOH703 5.0 42.8 1.0

Chlorine binding site 3 out of 9 in 3hjv

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Chlorine binding site 3 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl330

b:60.0
occ:1.00
O3 A:CXS324 2.9 36.6 0.8
O A:HOH376 3.2 24.4 1.0
C1 A:CXS324 3.6 37.3 0.9
C2 A:CXS324 3.7 38.6 0.9
S A:CXS324 3.8 35.2 0.8
O B:HOH457 4.0 39.3 1.0
CG A:GLN16 4.1 13.0 0.6
O A:HOH429 4.2 42.2 1.0
SE A:MSE137 4.4 19.2 0.6
SE A:MSE137 4.4 24.3 0.4
CB A:GLN16 4.5 14.0 0.6
CG1 A:VAL201 4.5 26.1 1.0
O1 A:CXS324 4.5 38.0 0.8
C3 A:CXS324 4.5 40.3 0.9
NE2 A:GLN16 4.5 20.6 0.4
O A:HOH385 4.7 36.9 1.0
OG A:SER205 4.7 15.0 0.5
CB A:GLN16 4.7 15.5 0.4
OG A:SER205 4.8 17.6 0.5
CE A:MSE137 4.8 14.6 0.6
O A:HOH634 5.0 28.6 0.7
CD A:GLN16 5.0 19.4 0.4

Chlorine binding site 4 out of 9 in 3hjv

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Chlorine binding site 4 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl331

b:39.9
occ:1.00
O A:HOH363 2.7 13.8 1.0
O A:HOH385 2.8 36.9 1.0
OG A:SER97 3.0 15.8 1.0
OE1 A:GLN16 3.0 21.1 0.4
NH1 A:ARG122 3.1 14.1 1.0
CD A:GLN16 3.7 19.4 0.4
CG A:GLN16 3.9 17.2 0.4
NH2 A:ARG122 3.9 16.5 1.0
CZ A:ARG122 3.9 14.3 1.0
CB A:SER97 3.9 13.4 1.0
N A:LEU98 3.9 12.0 1.0
NE2 A:GLN68 4.1 18.0 1.0
CB A:LEU98 4.2 11.9 1.0
CE A:MSE126 4.2 20.2 1.0
CD A:GLN68 4.3 16.1 1.0
O3 A:CXS324 4.4 36.6 0.8
SE A:MSE126 4.4 22.1 1.0
CB A:GLN16 4.5 14.0 0.6
CA A:LEU98 4.5 11.6 1.0
O A:HOH394 4.6 19.2 1.0
OE1 A:GLN68 4.7 14.9 1.0
CB A:GLN16 4.7 15.5 0.4
C A:SER97 4.7 12.8 1.0
NE2 A:HIS206 4.8 13.8 1.0
CG A:GLN68 4.8 13.4 1.0
NE2 A:GLN16 4.9 20.6 0.4
CA A:SER97 4.9 13.3 1.0

Chlorine binding site 5 out of 9 in 3hjv

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Chlorine binding site 5 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl332

b:52.6
occ:1.00
O B:HOH752 2.7 61.8 1.0
O A:HOH534 2.9 41.0 1.0
O A:HOH415 3.2 21.9 1.0
CD B:ARG195 3.6 18.2 1.0
NH2 A:ARG66 3.6 21.3 1.0
CZ A:PHE65 3.7 23.6 1.0
CD2 B:LEU197 3.7 20.0 1.0
O3 B:SO4319 4.1 35.9 0.5
CE2 A:PHE65 4.2 22.6 1.0
O A:HOH541 4.2 59.0 1.0
CG B:ARG195 4.3 17.5 1.0
O1 B:SO4319 4.5 35.5 0.5
CZ A:ARG66 4.6 24.2 1.0
CB B:ARG195 4.7 16.2 1.0
NE B:ARG195 4.7 20.2 1.0
CE1 A:PHE65 4.8 25.7 1.0
NE A:ARG66 4.8 21.4 1.0
S B:SO4319 5.0 34.3 0.5
OD1 A:ASP60 5.0 23.2 1.0

Chlorine binding site 6 out of 9 in 3hjv

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Chlorine binding site 6 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl322

b:30.1
occ:1.00
O B:HOH464 3.0 34.2 1.0
NE2 B:GLN19 3.1 12.9 1.0
NE2 B:GLN16 3.1 17.1 1.0
O B:HOH643 3.2 45.0 1.0
O B:HOH475 3.2 33.6 1.0
CA B:GLY17 3.7 13.8 1.0
N B:GLY17 3.8 13.9 1.0
CG B:GLN16 3.9 16.5 1.0
CD B:GLN16 4.0 18.5 1.0
CD B:GLN19 4.1 11.8 1.0
OE1 B:GLN19 4.2 13.7 1.0
O B:HOH532 4.3 19.4 0.5
O B:ASN62 4.6 16.2 1.0
C B:GLN16 4.6 13.7 1.0
OD1 B:ASN62 4.8 14.0 1.0
CB B:ASN62 4.8 13.3 1.0
CG B:ASN62 4.8 13.9 1.0
C B:GLY17 4.9 14.2 1.0

Chlorine binding site 7 out of 9 in 3hjv

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Chlorine binding site 7 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl323

b:41.2
occ:1.00
O B:HOH503 2.7 25.7 1.0
O B:HOH338 3.2 34.4 1.0
ND2 B:ASN62 3.2 13.9 1.0
O B:HOH614 3.4 21.4 0.5
CB B:ASN62 3.9 13.3 1.0
CA B:GLU59 4.0 13.9 1.0
CD2 A:LEU199 4.0 21.5 1.0
CG B:GLU59 4.0 15.0 1.0
CG B:ASN62 4.1 13.9 1.0
O B:HOH431 4.1 40.1 1.0
CB B:GLU59 4.2 13.9 1.0
CD A:PRO200 4.3 22.5 1.0
O B:HOH643 4.5 45.0 1.0
O B:GLU59 4.6 15.0 1.0
O B:HOH614 4.7 32.2 0.5
CG A:LEU199 4.7 21.0 1.0
CG1 B:VAL58 4.7 15.2 0.5
CD1 A:LEU199 4.7 21.2 1.0
CB A:LEU199 4.7 20.0 1.0
O B:HOH532 4.7 14.5 0.5
N B:GLU59 4.8 13.2 1.0
O B:VAL58 4.8 12.6 0.5
CG A:PRO200 4.8 22.5 1.0
C B:GLU59 4.8 13.9 1.0
O B:VAL58 4.9 13.4 0.5
O B:HOH417 5.0 29.2 1.0

Chlorine binding site 8 out of 9 in 3hjv

Go back to Chlorine Binding Sites List in 3hjv
Chlorine binding site 8 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl324

b:38.8
occ:1.00
O B:HOH328 2.7 13.1 1.0
O B:HOH352 2.9 38.4 1.0
O B:HOH523 3.0 44.3 1.0
NH1 B:ARG122 3.0 14.7 1.0
OG B:SER97 3.2 9.5 0.6
N B:LEU98 3.9 12.1 1.0
CB B:SER97 3.9 13.4 0.4
NH2 B:ARG122 3.9 16.9 1.0
CZ B:ARG122 3.9 15.4 1.0
NE2 B:GLN68 4.0 17.7 1.0
CB B:SER97 4.1 11.8 0.6
CB B:LEU98 4.1 13.0 1.0
CE B:MSE126 4.2 23.2 1.0
CD B:GLN68 4.2 14.7 1.0
SE B:MSE126 4.3 22.7 1.0
CA B:LEU98 4.5 11.6 1.0
CB B:GLN16 4.5 14.4 1.0
OE1 B:GLN68 4.5 16.0 1.0
O2 B:CXS321 4.7 53.0 0.5
CG B:GLN68 4.7 11.8 1.0
C B:SER97 4.8 12.5 0.4
C B:SER97 4.8 11.9 0.6
O3 B:CXS321 4.8 47.5 0.5
OG B:SER97 4.8 15.0 0.4
O B:HOH483 4.8 4.5 0.3
OG1 B:THR64 4.9 22.5 1.0
CA B:SER97 4.9 12.6 0.4
N B:GLN16 5.0 14.3 1.0
O2 B:CXS321 5.0 47.3 0.5

Chlorine binding site 9 out of 9 in 3hjv

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Chlorine binding site 9 out of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl325

b:41.1
occ:1.00
O B:HOH354 2.7 46.3 1.0
O B:HOH675 2.7 37.9 1.0
NZ B:LYS284 3.1 22.4 0.5
N B:ALA301 3.3 15.6 1.0
CE B:LYS284 3.6 21.4 0.5
CD B:LYS284 3.6 20.5 0.5
O B:HOH468 3.6 32.7 1.0
CA B:VAL300 3.7 16.7 1.0
CG2 B:VAL300 3.7 19.2 1.0
CD B:LYS284 3.9 20.6 0.5
CE B:LYS284 3.9 20.9 0.5
C B:VAL300 4.0 15.9 1.0
CB B:ALA301 4.2 15.1 1.0
CA B:ALA301 4.2 14.9 1.0
CB B:VAL300 4.3 16.8 1.0
O B:HOH517 4.3 36.3 1.0
CG2 B:THR287 4.3 15.6 1.0
O B:ALA301 4.4 16.1 1.0
O B:GLY299 4.5 16.5 1.0
CG B:LYS284 4.6 18.8 0.5
CG B:LYS284 4.7 18.8 0.5
N B:VAL300 4.8 16.0 1.0
C B:ALA301 4.8 15.4 1.0

Reference:

A.S.Halavaty, Z.Wawrzak, S.Anderson, T.Skarina, O.Onopriyenko, K.Kwon, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 To Be Published.
Page generated: Sat Dec 12 09:45:54 2020

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