Chlorine in PDB 3hjv: 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
Protein crystallography data
The structure of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3hjv
was solved by
A.S.Halavaty,
Z.Wawrzak,
S.Anderson,
T.Skarina,
O.Onopriyenko,
K.Kwon,
A.Savchenko,
W.F.Anderson,
Center For Structural Genomics Ofinfectious Diseases (Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.48 /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.525,
87.789,
121.957,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
14.5 /
19.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
(pdb code 3hjv). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the
1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3hjv:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Chlorine binding site 1 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 1 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl328
b:34.9
occ:1.00
|
O
|
B:HOH457
|
2.7
|
39.3
|
1.0
|
O
|
B:HOH482
|
2.9
|
37.5
|
1.0
|
O
|
A:HOH611
|
3.0
|
49.0
|
1.0
|
NE2
|
A:GLN16
|
3.2
|
13.0
|
0.6
|
NE2
|
A:GLN19
|
3.2
|
15.6
|
1.0
|
CA
|
A:GLY17
|
3.8
|
14.6
|
1.0
|
N
|
A:GLY17
|
3.9
|
14.7
|
1.0
|
O
|
A:HOH684
|
3.9
|
50.5
|
1.0
|
CG
|
A:GLN16
|
3.9
|
13.0
|
0.6
|
CD
|
A:GLN16
|
4.0
|
11.6
|
0.6
|
CD
|
A:GLN19
|
4.1
|
15.7
|
1.0
|
OE1
|
A:GLN19
|
4.2
|
14.9
|
1.0
|
O
|
B:HOH614
|
4.3
|
32.2
|
0.5
|
C
|
A:GLN16
|
4.6
|
14.4
|
0.6
|
O
|
B:HOH614
|
4.6
|
21.4
|
0.5
|
C
|
A:GLN16
|
4.7
|
14.9
|
0.4
|
O
|
B:HOH417
|
4.8
|
29.2
|
1.0
|
O
|
A:ASN62
|
4.8
|
15.8
|
1.0
|
OD1
|
A:ASN62
|
4.8
|
14.6
|
1.0
|
O
|
A:HOH475
|
4.9
|
21.4
|
1.0
|
C
|
A:GLY17
|
4.9
|
14.9
|
1.0
|
CG
|
A:ASN62
|
4.9
|
13.4
|
1.0
|
CB
|
A:GLN16
|
5.0
|
15.5
|
0.4
|
|
Chlorine binding site 2 out
of 9 in 3hjv
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Chlorine Binding Sites List in 3hjv
Chlorine binding site 2 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl329
b:47.4
occ:1.00
|
O
|
A:HOH501
|
2.5
|
36.9
|
1.0
|
NZ
|
A:LYS35
|
3.0
|
21.7
|
1.0
|
NE1
|
A:TRP50
|
3.1
|
13.3
|
1.0
|
O
|
A:HOH567
|
3.7
|
31.8
|
1.0
|
CE
|
A:LYS35
|
3.7
|
19.9
|
1.0
|
CD1
|
A:TRP50
|
4.0
|
13.2
|
1.0
|
CE2
|
A:TRP50
|
4.1
|
12.2
|
1.0
|
CD
|
A:LYS35
|
4.1
|
15.5
|
1.0
|
CZ2
|
A:TRP50
|
4.4
|
13.6
|
1.0
|
O
|
A:HOH748
|
4.8
|
51.5
|
1.0
|
OE1
|
A:GLU29
|
5.0
|
23.2
|
0.5
|
O
|
A:HOH703
|
5.0
|
42.8
|
1.0
|
|
Chlorine binding site 3 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 3 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl330
b:60.0
occ:1.00
|
O3
|
A:CXS324
|
2.9
|
36.6
|
0.8
|
O
|
A:HOH376
|
3.2
|
24.4
|
1.0
|
C1
|
A:CXS324
|
3.6
|
37.3
|
0.9
|
C2
|
A:CXS324
|
3.7
|
38.6
|
0.9
|
S
|
A:CXS324
|
3.8
|
35.2
|
0.8
|
O
|
B:HOH457
|
4.0
|
39.3
|
1.0
|
CG
|
A:GLN16
|
4.1
|
13.0
|
0.6
|
O
|
A:HOH429
|
4.2
|
42.2
|
1.0
|
SE
|
A:MSE137
|
4.4
|
19.2
|
0.6
|
SE
|
A:MSE137
|
4.4
|
24.3
|
0.4
|
CB
|
A:GLN16
|
4.5
|
14.0
|
0.6
|
CG1
|
A:VAL201
|
4.5
|
26.1
|
1.0
|
O1
|
A:CXS324
|
4.5
|
38.0
|
0.8
|
C3
|
A:CXS324
|
4.5
|
40.3
|
0.9
|
NE2
|
A:GLN16
|
4.5
|
20.6
|
0.4
|
O
|
A:HOH385
|
4.7
|
36.9
|
1.0
|
OG
|
A:SER205
|
4.7
|
15.0
|
0.5
|
CB
|
A:GLN16
|
4.7
|
15.5
|
0.4
|
OG
|
A:SER205
|
4.8
|
17.6
|
0.5
|
CE
|
A:MSE137
|
4.8
|
14.6
|
0.6
|
O
|
A:HOH634
|
5.0
|
28.6
|
0.7
|
CD
|
A:GLN16
|
5.0
|
19.4
|
0.4
|
|
Chlorine binding site 4 out
of 9 in 3hjv
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Chlorine Binding Sites List in 3hjv
Chlorine binding site 4 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl331
b:39.9
occ:1.00
|
O
|
A:HOH363
|
2.7
|
13.8
|
1.0
|
O
|
A:HOH385
|
2.8
|
36.9
|
1.0
|
OG
|
A:SER97
|
3.0
|
15.8
|
1.0
|
OE1
|
A:GLN16
|
3.0
|
21.1
|
0.4
|
NH1
|
A:ARG122
|
3.1
|
14.1
|
1.0
|
CD
|
A:GLN16
|
3.7
|
19.4
|
0.4
|
CG
|
A:GLN16
|
3.9
|
17.2
|
0.4
|
NH2
|
A:ARG122
|
3.9
|
16.5
|
1.0
|
CZ
|
A:ARG122
|
3.9
|
14.3
|
1.0
|
CB
|
A:SER97
|
3.9
|
13.4
|
1.0
|
N
|
A:LEU98
|
3.9
|
12.0
|
1.0
|
NE2
|
A:GLN68
|
4.1
|
18.0
|
1.0
|
CB
|
A:LEU98
|
4.2
|
11.9
|
1.0
|
CE
|
A:MSE126
|
4.2
|
20.2
|
1.0
|
CD
|
A:GLN68
|
4.3
|
16.1
|
1.0
|
O3
|
A:CXS324
|
4.4
|
36.6
|
0.8
|
SE
|
A:MSE126
|
4.4
|
22.1
|
1.0
|
CB
|
A:GLN16
|
4.5
|
14.0
|
0.6
|
CA
|
A:LEU98
|
4.5
|
11.6
|
1.0
|
O
|
A:HOH394
|
4.6
|
19.2
|
1.0
|
OE1
|
A:GLN68
|
4.7
|
14.9
|
1.0
|
CB
|
A:GLN16
|
4.7
|
15.5
|
0.4
|
C
|
A:SER97
|
4.7
|
12.8
|
1.0
|
NE2
|
A:HIS206
|
4.8
|
13.8
|
1.0
|
CG
|
A:GLN68
|
4.8
|
13.4
|
1.0
|
NE2
|
A:GLN16
|
4.9
|
20.6
|
0.4
|
CA
|
A:SER97
|
4.9
|
13.3
|
1.0
|
|
Chlorine binding site 5 out
of 9 in 3hjv
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Chlorine Binding Sites List in 3hjv
Chlorine binding site 5 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl332
b:52.6
occ:1.00
|
O
|
B:HOH752
|
2.7
|
61.8
|
1.0
|
O
|
A:HOH534
|
2.9
|
41.0
|
1.0
|
O
|
A:HOH415
|
3.2
|
21.9
|
1.0
|
CD
|
B:ARG195
|
3.6
|
18.2
|
1.0
|
NH2
|
A:ARG66
|
3.6
|
21.3
|
1.0
|
CZ
|
A:PHE65
|
3.7
|
23.6
|
1.0
|
CD2
|
B:LEU197
|
3.7
|
20.0
|
1.0
|
O3
|
B:SO4319
|
4.1
|
35.9
|
0.5
|
CE2
|
A:PHE65
|
4.2
|
22.6
|
1.0
|
O
|
A:HOH541
|
4.2
|
59.0
|
1.0
|
CG
|
B:ARG195
|
4.3
|
17.5
|
1.0
|
O1
|
B:SO4319
|
4.5
|
35.5
|
0.5
|
CZ
|
A:ARG66
|
4.6
|
24.2
|
1.0
|
CB
|
B:ARG195
|
4.7
|
16.2
|
1.0
|
NE
|
B:ARG195
|
4.7
|
20.2
|
1.0
|
CE1
|
A:PHE65
|
4.8
|
25.7
|
1.0
|
NE
|
A:ARG66
|
4.8
|
21.4
|
1.0
|
S
|
B:SO4319
|
5.0
|
34.3
|
0.5
|
OD1
|
A:ASP60
|
5.0
|
23.2
|
1.0
|
|
Chlorine binding site 6 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 6 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl322
b:30.1
occ:1.00
|
O
|
B:HOH464
|
3.0
|
34.2
|
1.0
|
NE2
|
B:GLN19
|
3.1
|
12.9
|
1.0
|
NE2
|
B:GLN16
|
3.1
|
17.1
|
1.0
|
O
|
B:HOH643
|
3.2
|
45.0
|
1.0
|
O
|
B:HOH475
|
3.2
|
33.6
|
1.0
|
CA
|
B:GLY17
|
3.7
|
13.8
|
1.0
|
N
|
B:GLY17
|
3.8
|
13.9
|
1.0
|
CG
|
B:GLN16
|
3.9
|
16.5
|
1.0
|
CD
|
B:GLN16
|
4.0
|
18.5
|
1.0
|
CD
|
B:GLN19
|
4.1
|
11.8
|
1.0
|
OE1
|
B:GLN19
|
4.2
|
13.7
|
1.0
|
O
|
B:HOH532
|
4.3
|
19.4
|
0.5
|
O
|
B:ASN62
|
4.6
|
16.2
|
1.0
|
C
|
B:GLN16
|
4.6
|
13.7
|
1.0
|
OD1
|
B:ASN62
|
4.8
|
14.0
|
1.0
|
CB
|
B:ASN62
|
4.8
|
13.3
|
1.0
|
CG
|
B:ASN62
|
4.8
|
13.9
|
1.0
|
C
|
B:GLY17
|
4.9
|
14.2
|
1.0
|
|
Chlorine binding site 7 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 7 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl323
b:41.2
occ:1.00
|
O
|
B:HOH503
|
2.7
|
25.7
|
1.0
|
O
|
B:HOH338
|
3.2
|
34.4
|
1.0
|
ND2
|
B:ASN62
|
3.2
|
13.9
|
1.0
|
O
|
B:HOH614
|
3.4
|
21.4
|
0.5
|
CB
|
B:ASN62
|
3.9
|
13.3
|
1.0
|
CA
|
B:GLU59
|
4.0
|
13.9
|
1.0
|
CD2
|
A:LEU199
|
4.0
|
21.5
|
1.0
|
CG
|
B:GLU59
|
4.0
|
15.0
|
1.0
|
CG
|
B:ASN62
|
4.1
|
13.9
|
1.0
|
O
|
B:HOH431
|
4.1
|
40.1
|
1.0
|
CB
|
B:GLU59
|
4.2
|
13.9
|
1.0
|
CD
|
A:PRO200
|
4.3
|
22.5
|
1.0
|
O
|
B:HOH643
|
4.5
|
45.0
|
1.0
|
O
|
B:GLU59
|
4.6
|
15.0
|
1.0
|
O
|
B:HOH614
|
4.7
|
32.2
|
0.5
|
CG
|
A:LEU199
|
4.7
|
21.0
|
1.0
|
CG1
|
B:VAL58
|
4.7
|
15.2
|
0.5
|
CD1
|
A:LEU199
|
4.7
|
21.2
|
1.0
|
CB
|
A:LEU199
|
4.7
|
20.0
|
1.0
|
O
|
B:HOH532
|
4.7
|
14.5
|
0.5
|
N
|
B:GLU59
|
4.8
|
13.2
|
1.0
|
O
|
B:VAL58
|
4.8
|
12.6
|
0.5
|
CG
|
A:PRO200
|
4.8
|
22.5
|
1.0
|
C
|
B:GLU59
|
4.8
|
13.9
|
1.0
|
O
|
B:VAL58
|
4.9
|
13.4
|
0.5
|
O
|
B:HOH417
|
5.0
|
29.2
|
1.0
|
|
Chlorine binding site 8 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 8 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl324
b:38.8
occ:1.00
|
O
|
B:HOH328
|
2.7
|
13.1
|
1.0
|
O
|
B:HOH352
|
2.9
|
38.4
|
1.0
|
O
|
B:HOH523
|
3.0
|
44.3
|
1.0
|
NH1
|
B:ARG122
|
3.0
|
14.7
|
1.0
|
OG
|
B:SER97
|
3.2
|
9.5
|
0.6
|
N
|
B:LEU98
|
3.9
|
12.1
|
1.0
|
CB
|
B:SER97
|
3.9
|
13.4
|
0.4
|
NH2
|
B:ARG122
|
3.9
|
16.9
|
1.0
|
CZ
|
B:ARG122
|
3.9
|
15.4
|
1.0
|
NE2
|
B:GLN68
|
4.0
|
17.7
|
1.0
|
CB
|
B:SER97
|
4.1
|
11.8
|
0.6
|
CB
|
B:LEU98
|
4.1
|
13.0
|
1.0
|
CE
|
B:MSE126
|
4.2
|
23.2
|
1.0
|
CD
|
B:GLN68
|
4.2
|
14.7
|
1.0
|
SE
|
B:MSE126
|
4.3
|
22.7
|
1.0
|
CA
|
B:LEU98
|
4.5
|
11.6
|
1.0
|
CB
|
B:GLN16
|
4.5
|
14.4
|
1.0
|
OE1
|
B:GLN68
|
4.5
|
16.0
|
1.0
|
O2
|
B:CXS321
|
4.7
|
53.0
|
0.5
|
CG
|
B:GLN68
|
4.7
|
11.8
|
1.0
|
C
|
B:SER97
|
4.8
|
12.5
|
0.4
|
C
|
B:SER97
|
4.8
|
11.9
|
0.6
|
O3
|
B:CXS321
|
4.8
|
47.5
|
0.5
|
OG
|
B:SER97
|
4.8
|
15.0
|
0.4
|
O
|
B:HOH483
|
4.8
|
4.5
|
0.3
|
OG1
|
B:THR64
|
4.9
|
22.5
|
1.0
|
CA
|
B:SER97
|
4.9
|
12.6
|
0.4
|
N
|
B:GLN16
|
5.0
|
14.3
|
1.0
|
O2
|
B:CXS321
|
5.0
|
47.3
|
0.5
|
|
Chlorine binding site 9 out
of 9 in 3hjv
Go back to
Chlorine Binding Sites List in 3hjv
Chlorine binding site 9 out
of 9 in the 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of 1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl325
b:41.1
occ:1.00
|
O
|
B:HOH354
|
2.7
|
46.3
|
1.0
|
O
|
B:HOH675
|
2.7
|
37.9
|
1.0
|
NZ
|
B:LYS284
|
3.1
|
22.4
|
0.5
|
N
|
B:ALA301
|
3.3
|
15.6
|
1.0
|
CE
|
B:LYS284
|
3.6
|
21.4
|
0.5
|
CD
|
B:LYS284
|
3.6
|
20.5
|
0.5
|
O
|
B:HOH468
|
3.6
|
32.7
|
1.0
|
CA
|
B:VAL300
|
3.7
|
16.7
|
1.0
|
CG2
|
B:VAL300
|
3.7
|
19.2
|
1.0
|
CD
|
B:LYS284
|
3.9
|
20.6
|
0.5
|
CE
|
B:LYS284
|
3.9
|
20.9
|
0.5
|
C
|
B:VAL300
|
4.0
|
15.9
|
1.0
|
CB
|
B:ALA301
|
4.2
|
15.1
|
1.0
|
CA
|
B:ALA301
|
4.2
|
14.9
|
1.0
|
CB
|
B:VAL300
|
4.3
|
16.8
|
1.0
|
O
|
B:HOH517
|
4.3
|
36.3
|
1.0
|
CG2
|
B:THR287
|
4.3
|
15.6
|
1.0
|
O
|
B:ALA301
|
4.4
|
16.1
|
1.0
|
O
|
B:GLY299
|
4.5
|
16.5
|
1.0
|
CG
|
B:LYS284
|
4.6
|
18.8
|
0.5
|
CG
|
B:LYS284
|
4.7
|
18.8
|
0.5
|
N
|
B:VAL300
|
4.8
|
16.0
|
1.0
|
C
|
B:ALA301
|
4.8
|
15.4
|
1.0
|
|
Reference:
A.S.Halavaty,
Z.Wawrzak,
S.Anderson,
T.Skarina,
O.Onopriyenko,
K.Kwon,
A.Savchenko,
W.F.Anderson,
Center For Structural Genomics Of Infectious Diseases(Csgid).
1.7 Angstrom Resolution Crystal Structure of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 To Be Published.
Page generated: Sat Jul 20 20:52:51 2024
|