Chlorine in PDB 3i2f: Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Protein crystallography data
The structure of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct, PDB code: 3i2f
was solved by
J.J.G.Tesmer,
M.R.Nance,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.50
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
106.250,
106.250,
220.041,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.3 /
20.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
(pdb code 3i2f). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct, PDB code: 3i2f:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 3i2f
Go back to
Chlorine Binding Sites List in 3i2f
Chlorine binding site 1 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl588
b:59.5
occ:1.00
|
N
|
A:LYS298
|
3.4
|
37.8
|
1.0
|
NH1
|
A:ARG472
|
3.5
|
39.4
|
1.0
|
O
|
A:LYS298
|
3.6
|
38.4
|
1.0
|
NH1
|
A:ARG297
|
3.9
|
35.6
|
1.0
|
CD
|
A:ARG297
|
4.1
|
34.3
|
1.0
|
CB
|
A:LYS298
|
4.1
|
39.2
|
1.0
|
CA
|
A:LYS298
|
4.1
|
38.5
|
1.0
|
CA
|
A:ARG297
|
4.2
|
37.4
|
1.0
|
C
|
A:ARG297
|
4.3
|
37.7
|
1.0
|
C
|
A:LYS298
|
4.3
|
38.0
|
1.0
|
NH2
|
A:ARG472
|
4.4
|
41.5
|
1.0
|
CZ
|
A:ARG472
|
4.4
|
41.2
|
1.0
|
CZ
|
A:ARG297
|
4.8
|
35.9
|
1.0
|
O
|
A:ASP296
|
4.8
|
37.3
|
1.0
|
NE
|
A:ARG297
|
4.8
|
36.2
|
1.0
|
CG
|
A:ARG297
|
4.8
|
36.2
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 3i2f
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Chlorine Binding Sites List in 3i2f
Chlorine binding site 2 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl589
b:75.5
occ:1.00
|
N
|
A:GLU83
|
2.9
|
50.9
|
1.0
|
NH1
|
A:ARG75
|
3.1
|
43.3
|
1.0
|
CA
|
A:GLY82
|
3.3
|
49.0
|
1.0
|
CD
|
A:ARG75
|
3.5
|
43.4
|
1.0
|
C
|
A:GLY82
|
3.6
|
49.7
|
1.0
|
CG
|
A:ARG75
|
3.9
|
42.6
|
1.0
|
O
|
A:GLU83
|
3.9
|
50.5
|
1.0
|
CA
|
A:GLU83
|
3.9
|
51.5
|
1.0
|
CG
|
A:GLU83
|
4.0
|
55.5
|
1.0
|
CB
|
A:GLU83
|
4.1
|
52.2
|
1.0
|
CZ
|
A:ARG75
|
4.1
|
44.4
|
1.0
|
NE
|
A:ARG75
|
4.3
|
44.9
|
1.0
|
CG2
|
A:VAL20
|
4.3
|
47.1
|
1.0
|
C
|
A:GLU83
|
4.4
|
51.0
|
1.0
|
N
|
A:GLY82
|
4.6
|
48.9
|
1.0
|
CG1
|
A:VAL20
|
4.7
|
46.8
|
1.0
|
O
|
A:GLY82
|
4.8
|
49.0
|
1.0
|
OD2
|
A:ASP18
|
4.9
|
52.8
|
1.0
|
CB
|
A:VAL20
|
5.0
|
47.1
|
1.0
|
CD
|
A:GLU83
|
5.0
|
59.8
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 3i2f
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Chlorine Binding Sites List in 3i2f
Chlorine binding site 3 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl590
b:46.5
occ:0.50
|
O
|
A:PRO354
|
2.5
|
37.1
|
0.5
|
O
|
A:HOH879
|
3.2
|
52.9
|
1.0
|
CB
|
A:ASP355
|
3.5
|
37.6
|
0.5
|
CD
|
A:PRO354
|
3.5
|
37.7
|
0.5
|
N
|
A:ASP355
|
3.6
|
37.9
|
0.5
|
C
|
A:PRO354
|
3.7
|
37.3
|
0.5
|
OD2
|
A:ASP355
|
3.7
|
38.4
|
0.5
|
CG
|
A:ASP355
|
3.8
|
37.9
|
0.5
|
CB
|
A:LEU353
|
4.0
|
36.8
|
1.0
|
CB
|
A:ASP355
|
4.0
|
37.0
|
0.5
|
N
|
A:PRO354
|
4.1
|
37.7
|
0.5
|
CA
|
A:ASP355
|
4.1
|
37.6
|
0.5
|
N
|
A:PRO354
|
4.2
|
37.4
|
0.5
|
CD2
|
A:LEU353
|
4.3
|
36.9
|
1.0
|
CD
|
A:PRO354
|
4.3
|
37.5
|
0.5
|
CG
|
A:LEU353
|
4.3
|
37.2
|
1.0
|
CA
|
A:PRO354
|
4.5
|
37.3
|
0.5
|
CG
|
A:PRO354
|
4.5
|
37.8
|
0.5
|
CG2
|
A:ILE572
|
4.5
|
39.2
|
1.0
|
C
|
A:LEU353
|
4.5
|
37.2
|
1.0
|
C
|
A:PRO354
|
4.7
|
38.0
|
0.5
|
CA
|
A:LEU353
|
4.7
|
37.2
|
1.0
|
N
|
A:ASP355
|
4.7
|
36.9
|
0.5
|
OE1
|
A:GLU348
|
4.7
|
50.4
|
1.0
|
OD1
|
A:ASP355
|
4.7
|
38.7
|
0.5
|
CB
|
A:PRO354
|
4.7
|
37.2
|
0.5
|
C
|
A:ASP355
|
4.7
|
37.2
|
0.5
|
CA
|
A:PRO354
|
4.8
|
37.8
|
0.5
|
CA
|
A:ASP355
|
4.8
|
36.9
|
0.5
|
CB
|
A:PRO354
|
4.9
|
37.8
|
0.5
|
CG
|
A:ASP355
|
4.9
|
37.0
|
0.5
|
CD1
|
A:ILE572
|
4.9
|
38.4
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 3i2f
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Chlorine Binding Sites List in 3i2f
Chlorine binding site 4 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl591
b:59.3
occ:1.00
|
N
|
A:TRP345
|
3.1
|
38.4
|
1.0
|
CA
|
A:GLU344
|
3.8
|
40.0
|
1.0
|
CD1
|
A:TRP345
|
3.8
|
33.0
|
1.0
|
CB
|
A:TRP345
|
3.9
|
36.7
|
1.0
|
C
|
A:GLU344
|
3.9
|
39.2
|
1.0
|
CA
|
A:TRP345
|
4.0
|
38.2
|
1.0
|
CB
|
A:GLU344
|
4.1
|
40.3
|
1.0
|
CG
|
A:GLU344
|
4.1
|
44.0
|
1.0
|
CB
|
A:ALA302
|
4.2
|
37.2
|
1.0
|
CG
|
A:TRP345
|
4.2
|
35.5
|
1.0
|
O
|
A:TRP345
|
4.4
|
38.9
|
1.0
|
O
|
A:HOH671
|
4.7
|
44.4
|
1.0
|
O
|
A:ASP343
|
4.8
|
39.8
|
1.0
|
C
|
A:TRP345
|
4.8
|
39.0
|
1.0
|
NE1
|
A:TRP345
|
5.0
|
32.9
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 3i2f
Go back to
Chlorine Binding Sites List in 3i2f
Chlorine binding site 5 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl597
b:86.8
occ:1.00
|
NH2
|
A:ARG556
|
3.6
|
54.4
|
1.0
|
NH1
|
A:ARG556
|
3.8
|
54.3
|
1.0
|
CZ
|
A:ARG556
|
4.2
|
54.5
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 3i2f
Go back to
Chlorine Binding Sites List in 3i2f
Chlorine binding site 6 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl598
b:81.5
occ:1.00
|
NE2
|
A:HIS563
|
3.6
|
53.5
|
1.0
|
O
|
A:HOH809
|
4.0
|
49.4
|
1.0
|
CD1
|
A:ILE500
|
4.1
|
46.6
|
1.0
|
CE1
|
A:HIS563
|
4.3
|
53.1
|
1.0
|
CB
|
A:ILE500
|
4.5
|
46.9
|
1.0
|
CD2
|
A:HIS563
|
4.6
|
52.9
|
1.0
|
CG1
|
A:ILE500
|
4.8
|
46.7
|
1.0
|
CG2
|
A:ILE500
|
5.0
|
46.5
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 3i2f
Go back to
Chlorine Binding Sites List in 3i2f
Chlorine binding site 7 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl599
b:80.4
occ:1.00
|
O
|
A:HOH839
|
3.1
|
59.2
|
1.0
|
NH1
|
A:ARG28
|
3.6
|
42.6
|
1.0
|
NH2
|
A:ARG28
|
3.8
|
42.8
|
1.0
|
CZ
|
A:ARG28
|
4.1
|
41.9
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 3i2f
Go back to
Chlorine Binding Sites List in 3i2f
Chlorine binding site 8 out
of 8 in the Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Cocaine Esterase with Mutations T172R / G173Q, Bound to Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl600
b:72.5
occ:1.00
|
O
|
A:HOH806
|
3.1
|
63.9
|
1.0
|
NH2
|
A:ARG519
|
3.5
|
44.1
|
1.0
|
NH1
|
A:ARG519
|
3.7
|
43.4
|
1.0
|
CZ
|
A:ARG519
|
4.1
|
42.8
|
1.0
|
CA
|
A:GLU433
|
4.5
|
45.5
|
1.0
|
CG
|
A:GLU433
|
4.5
|
49.1
|
1.0
|
O
|
A:HOH803
|
4.7
|
55.8
|
1.0
|
CB
|
A:GLU433
|
4.8
|
45.4
|
1.0
|
|
Reference:
D.Narasimhan,
M.R.Nance,
D.Gao,
M.C.Ko,
J.Macdonald,
P.Tamburi,
D.Yoon,
D.M.Landry,
J.H.Woods,
C.G.Zhan,
J.J.Tesmer,
R.K.Sunahara.
Structural Analysis of Thermostabilizing Mutations of Cocaine Esterase. Protein Eng.Des.Sel. V. 23 537 2010.
ISSN: ISSN 1741-0126
PubMed: 20436035
DOI: 10.1093/PROTEIN/GZQ025
Page generated: Sat Jul 20 21:11:41 2024
|