Chlorine in PDB 3i2j: Cocaine Esterase, Wild Type, Without A Ligand
Protein crystallography data
The structure of Cocaine Esterase, Wild Type, Without A Ligand, PDB code: 3i2j
was solved by
J.J.G.Tesmer,
M.R.Nance,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.01
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.801,
105.801,
222.238,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.7 /
17.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Cocaine Esterase, Wild Type, Without A Ligand
(pdb code 3i2j). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Cocaine Esterase, Wild Type, Without A Ligand, PDB code: 3i2j:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 1 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl588
b:28.7
occ:1.00
|
N
|
A:LYS298
|
3.2
|
20.7
|
0.5
|
N
|
A:LYS298
|
3.2
|
20.6
|
0.5
|
O
|
A:HOH870
|
3.3
|
39.0
|
1.0
|
NH1
|
A:ARG472
|
3.4
|
23.3
|
1.0
|
O
|
A:HOH1145
|
3.6
|
38.7
|
1.0
|
O
|
A:HOH1146
|
3.6
|
54.5
|
1.0
|
O
|
A:LYS298
|
3.6
|
20.5
|
0.5
|
O
|
A:LYS298
|
3.7
|
20.6
|
0.5
|
CA
|
A:ARG297
|
3.8
|
20.5
|
1.0
|
CD
|
A:ARG297
|
3.8
|
20.0
|
1.0
|
NH1
|
A:ARG297
|
3.9
|
20.4
|
1.0
|
C
|
A:ARG297
|
4.0
|
20.6
|
1.0
|
CA
|
A:LYS298
|
4.1
|
21.0
|
0.5
|
CA
|
A:LYS298
|
4.2
|
20.8
|
0.5
|
CB
|
A:LYS298
|
4.3
|
21.5
|
0.5
|
C
|
A:LYS298
|
4.3
|
20.5
|
0.5
|
C
|
A:LYS298
|
4.3
|
20.6
|
0.5
|
CZ
|
A:ARG472
|
4.4
|
23.0
|
1.0
|
CB
|
A:LYS298
|
4.4
|
21.1
|
0.5
|
O
|
A:ASP296
|
4.4
|
21.0
|
1.0
|
NH2
|
A:ARG472
|
4.5
|
24.6
|
1.0
|
CG
|
A:ARG297
|
4.6
|
19.7
|
1.0
|
NE
|
A:ARG297
|
4.7
|
19.6
|
1.0
|
N
|
A:ARG297
|
4.7
|
20.6
|
1.0
|
CZ
|
A:ARG297
|
4.7
|
20.4
|
1.0
|
CB
|
A:ARG297
|
4.7
|
20.5
|
1.0
|
CD
|
A:LYS298
|
4.9
|
24.4
|
0.5
|
C
|
A:ASP296
|
4.9
|
20.9
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 2 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl589
b:37.1
occ:1.00
|
O
|
A:HOH748
|
2.9
|
52.1
|
1.0
|
O
|
A:HOH1218
|
3.0
|
51.3
|
1.0
|
N
|
A:TRP345
|
3.2
|
20.9
|
1.0
|
CA
|
A:GLU344
|
3.7
|
21.9
|
1.0
|
CD1
|
A:TRP345
|
3.8
|
20.2
|
1.0
|
C
|
A:GLU344
|
4.0
|
21.2
|
1.0
|
CB
|
A:TRP345
|
4.0
|
20.9
|
1.0
|
CB
|
A:ALA302
|
4.1
|
21.5
|
1.0
|
CA
|
A:TRP345
|
4.1
|
21.3
|
1.0
|
CB
|
A:GLU344
|
4.2
|
21.5
|
1.0
|
CG
|
A:TRP345
|
4.3
|
20.9
|
1.0
|
O
|
A:HOH906
|
4.3
|
44.4
|
1.0
|
O
|
A:TRP345
|
4.5
|
21.8
|
1.0
|
CG
|
A:GLU344
|
4.5
|
23.9
|
1.0
|
O
|
A:ASP343
|
4.7
|
21.0
|
1.0
|
C
|
A:TRP345
|
4.8
|
21.9
|
1.0
|
N
|
A:GLU344
|
5.0
|
20.8
|
1.0
|
NE1
|
A:TRP345
|
5.0
|
20.2
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 3 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl594
b:77.4
occ:1.00
|
NH1
|
A:ARG556
|
3.3
|
27.5
|
0.8
|
NH2
|
A:ARG556
|
3.5
|
27.5
|
0.8
|
CZ
|
A:ARG556
|
3.9
|
27.7
|
0.8
|
NH1
|
A:ARG556
|
4.2
|
23.4
|
0.2
|
CZ
|
A:ARG556
|
4.3
|
23.6
|
0.2
|
NH2
|
A:ARG556
|
4.3
|
23.2
|
0.2
|
NE
|
A:ARG556
|
4.9
|
23.1
|
0.2
|
|
Chlorine binding site 4 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 4 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl595
b:71.2
occ:1.00
|
NH1
|
A:ARG182
|
3.7
|
49.3
|
1.0
|
NH2
|
A:ARG182
|
3.8
|
50.0
|
1.0
|
O
|
A:HOH1212
|
3.8
|
49.8
|
1.0
|
CZ
|
A:ARG182
|
4.2
|
49.2
|
1.0
|
NH1
|
A:ARG178
|
4.6
|
43.1
|
0.5
|
|
Chlorine binding site 5 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 5 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl596
b:70.0
occ:1.00
|
NE2
|
A:HIS563
|
3.3
|
30.2
|
1.0
|
O
|
A:HOH1204
|
3.5
|
39.1
|
1.0
|
CD1
|
A:ILE500
|
3.9
|
26.2
|
1.0
|
CD2
|
A:HIS563
|
4.2
|
29.8
|
1.0
|
CE1
|
A:HIS563
|
4.3
|
30.4
|
1.0
|
O
|
A:HOH1090
|
4.3
|
28.3
|
1.0
|
CB
|
A:ILE500
|
4.3
|
26.6
|
1.0
|
CG1
|
A:ILE500
|
4.6
|
26.5
|
1.0
|
CG2
|
A:ILE500
|
4.7
|
25.9
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 3i2j
Go back to
Chlorine Binding Sites List in 3i2j
Chlorine binding site 6 out
of 6 in the Cocaine Esterase, Wild Type, Without A Ligand
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Cocaine Esterase, Wild Type, Without A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl597
b:90.7
occ:1.00
|
NH1
|
A:ARG28
|
3.5
|
26.8
|
1.0
|
NH2
|
A:ARG28
|
3.8
|
26.9
|
1.0
|
O
|
A:HOH839
|
3.9
|
47.6
|
1.0
|
CZ
|
A:ARG28
|
4.1
|
27.2
|
1.0
|
O
|
A:HOH722
|
4.5
|
54.8
|
1.0
|
O
|
A:HOH836
|
4.8
|
41.3
|
1.0
|
|
Reference:
D.Narasimhan,
M.R.Nance,
D.Gao,
M.C.Ko,
J.Macdonald,
P.Tamburi,
D.Yoon,
D.M.Landry,
J.H.Woods,
C.G.Zhan,
J.J.Tesmer,
R.K.Sunahara.
Structural Analysis of Thermostabilizing Mutations of Cocaine Esterase. Protein Eng.Des.Sel. V. 23 537 2010.
ISSN: ISSN 1741-0126
PubMed: 20436035
DOI: 10.1093/PROTEIN/GZQ025
Page generated: Sat Jul 20 21:13:08 2024
|