Chlorine in PDB 3i2k: Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Protein crystallography data
The structure of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct, PDB code: 3i2k
was solved by
J.J.G.Tesmer,
M.R.Nance,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
1.51
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.513,
105.513,
222.377,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
14.6 /
15.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
(pdb code 3i2k). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Cocaine Esterase, Wild Type, Bound to A Dtt Adduct, PDB code: 3i2k:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 1 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl588
b:17.3
occ:1.00
|
N
|
A:LYS298
|
3.3
|
11.4
|
0.5
|
N
|
A:LYS298
|
3.3
|
11.3
|
0.5
|
O
|
A:HOH1047
|
3.3
|
30.4
|
1.0
|
NH1
|
A:ARG472
|
3.3
|
14.4
|
1.0
|
O
|
A:HOH1368
|
3.3
|
40.8
|
1.0
|
O
|
A:HOH1459
|
3.4
|
33.0
|
1.0
|
O
|
A:LYS298
|
3.6
|
11.6
|
0.5
|
O
|
A:HOH1367
|
3.6
|
33.3
|
1.0
|
O
|
A:LYS298
|
3.7
|
11.4
|
0.5
|
CD
|
A:ARG297
|
3.8
|
10.6
|
1.0
|
CA
|
A:ARG297
|
3.8
|
10.4
|
1.0
|
NH1
|
A:ARG297
|
3.8
|
11.2
|
1.0
|
C
|
A:ARG297
|
4.0
|
10.9
|
1.0
|
CA
|
A:LYS298
|
4.2
|
11.8
|
0.5
|
CA
|
A:LYS298
|
4.2
|
11.7
|
0.5
|
CB
|
A:LYS298
|
4.3
|
12.5
|
0.5
|
C
|
A:LYS298
|
4.3
|
11.2
|
0.5
|
C
|
A:LYS298
|
4.4
|
11.1
|
0.5
|
CZ
|
A:ARG472
|
4.4
|
13.2
|
1.0
|
O
|
A:ASP296
|
4.4
|
11.0
|
1.0
|
O
|
A:HOH1292
|
4.4
|
36.8
|
1.0
|
CB
|
A:LYS298
|
4.4
|
12.2
|
0.5
|
CG
|
A:ARG297
|
4.5
|
10.2
|
1.0
|
NH2
|
A:ARG472
|
4.5
|
15.9
|
1.0
|
NE
|
A:ARG297
|
4.5
|
10.9
|
1.0
|
CZ
|
A:ARG297
|
4.6
|
11.5
|
1.0
|
N
|
A:ARG297
|
4.7
|
10.5
|
1.0
|
CB
|
A:ARG297
|
4.7
|
10.1
|
1.0
|
C
|
A:ASP296
|
4.9
|
10.8
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 2 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl589
b:24.6
occ:1.00
|
O
|
A:HOH1020
|
2.9
|
30.5
|
1.0
|
N
|
A:GLU83
|
3.1
|
15.9
|
1.0
|
NH1
|
A:ARG75
|
3.2
|
15.5
|
1.0
|
CA
|
A:GLY82
|
3.5
|
15.6
|
1.0
|
CD
|
A:ARG75
|
3.6
|
12.9
|
1.0
|
C
|
A:GLY82
|
3.8
|
15.8
|
1.0
|
CB
|
A:GLU83
|
4.0
|
17.3
|
1.0
|
O
|
A:GLU83
|
4.0
|
14.9
|
1.0
|
CA
|
A:GLU83
|
4.0
|
16.3
|
1.0
|
CG
|
A:GLU83
|
4.0
|
21.9
|
1.0
|
CG
|
A:ARG75
|
4.1
|
12.5
|
1.0
|
CZ
|
A:ARG75
|
4.2
|
14.0
|
1.0
|
NE
|
A:ARG75
|
4.4
|
13.2
|
1.0
|
CG2
|
A:VAL20
|
4.4
|
16.7
|
1.0
|
C
|
A:GLU83
|
4.5
|
15.3
|
1.0
|
O
|
A:HOH1341
|
4.5
|
38.1
|
1.0
|
O
|
A:HOH623
|
4.6
|
35.1
|
1.0
|
N
|
A:GLY82
|
4.9
|
15.8
|
1.0
|
OD2
|
A:ASP18
|
4.9
|
19.0
|
1.0
|
CG1
|
A:VAL20
|
4.9
|
16.0
|
1.0
|
O
|
A:GLY82
|
5.0
|
15.9
|
1.0
|
O
|
A:HOH811
|
5.0
|
42.6
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 3 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl590
b:24.9
occ:1.00
|
O
|
A:HOH748
|
2.7
|
41.1
|
1.0
|
O
|
A:HOH1461
|
2.9
|
45.7
|
1.0
|
O
|
A:HOH1010
|
3.1
|
28.2
|
1.0
|
N
|
A:TRP345
|
3.1
|
11.6
|
1.0
|
CD1
|
A:TRP345
|
3.6
|
12.5
|
1.0
|
CA
|
A:GLU344
|
3.7
|
12.9
|
1.0
|
CB
|
A:TRP345
|
3.9
|
11.7
|
1.0
|
C
|
A:GLU344
|
3.9
|
12.2
|
1.0
|
CB
|
A:ALA302
|
4.0
|
12.6
|
1.0
|
CA
|
A:TRP345
|
4.1
|
11.8
|
1.0
|
CB
|
A:GLU344
|
4.1
|
14.7
|
1.0
|
CG
|
A:TRP345
|
4.2
|
11.7
|
1.0
|
O
|
A:TRP345
|
4.5
|
13.4
|
1.0
|
CG
|
A:GLU344
|
4.7
|
18.8
|
1.0
|
O
|
A:ASP343
|
4.7
|
12.2
|
1.0
|
C
|
A:TRP345
|
4.8
|
12.3
|
1.0
|
O
|
A:HOH1090
|
4.8
|
47.1
|
1.0
|
NE1
|
A:TRP345
|
4.8
|
12.3
|
1.0
|
N
|
A:GLU344
|
4.9
|
11.9
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 4 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl596
b:69.5
occ:1.00
|
NH1
|
A:ARG556
|
3.6
|
24.2
|
0.8
|
NH2
|
A:ARG556
|
3.7
|
23.0
|
0.8
|
CZ
|
A:ARG556
|
4.1
|
23.1
|
0.8
|
NH1
|
A:ARG556
|
4.5
|
16.6
|
0.2
|
CZ
|
A:ARG556
|
4.6
|
16.0
|
0.2
|
NH2
|
A:ARG556
|
4.7
|
16.0
|
0.2
|
|
Chlorine binding site 5 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 5 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl597
b:70.5
occ:1.00
|
NH1
|
A:ARG182
|
3.7
|
37.3
|
1.0
|
NH2
|
A:ARG182
|
3.7
|
37.9
|
1.0
|
O
|
A:HOH1449
|
3.9
|
37.2
|
1.0
|
CZ
|
A:ARG182
|
4.2
|
36.7
|
1.0
|
O
|
A:HOH733
|
4.5
|
44.4
|
1.0
|
NH1
|
A:ARG178
|
4.8
|
32.4
|
0.6
|
|
Chlorine binding site 6 out
of 6 in 3i2k
Go back to
Chlorine Binding Sites List in 3i2k
Chlorine binding site 6 out
of 6 in the Cocaine Esterase, Wild Type, Bound to A Dtt Adduct
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Cocaine Esterase, Wild Type, Bound to A Dtt Adduct within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl598
b:80.2
occ:1.00
|
O
|
A:HOH1439
|
3.0
|
34.8
|
1.0
|
NE2
|
A:HIS563
|
3.5
|
22.3
|
1.0
|
O
|
A:HOH702
|
3.6
|
49.2
|
1.0
|
O
|
A:HOH1290
|
3.9
|
23.2
|
1.0
|
CD1
|
A:ILE500
|
4.1
|
16.9
|
1.0
|
CB
|
A:ILE500
|
4.2
|
15.9
|
1.0
|
CD2
|
A:HIS563
|
4.4
|
21.2
|
1.0
|
CE1
|
A:HIS563
|
4.4
|
21.9
|
1.0
|
O
|
A:HOH690
|
4.5
|
48.5
|
1.0
|
CG1
|
A:ILE500
|
4.6
|
16.6
|
1.0
|
O
|
A:HOH799
|
4.7
|
46.6
|
1.0
|
CG2
|
A:ILE500
|
4.7
|
17.1
|
1.0
|
|
Reference:
D.Narasimhan,
M.R.Nance,
D.Gao,
M.C.Ko,
J.Macdonald,
P.Tamburi,
D.Yoon,
D.M.Landry,
J.H.Woods,
C.G.Zhan,
J.J.Tesmer,
R.K.Sunahara.
Structural Analysis of Thermostabilizing Mutations of Cocaine Esterase. Protein Eng.Des.Sel. V. 23 537 2010.
ISSN: ISSN 1741-0126
PubMed: 20436035
DOI: 10.1093/PROTEIN/GZQ025
Page generated: Sat Jul 20 21:14:11 2024
|