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Chlorine in PDB 3ide: Structure of Ipnv Subviral Particle

Protein crystallography data

The structure of Structure of Ipnv Subviral Particle, PDB code: 3ide was solved by F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.75 / 3.35
Space group I 2 3 1
Cell size a, b, c (Å), α, β, γ (°) 303.431, 303.431, 303.431, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 23.3

Other elements in 3ide:

The structure of Structure of Ipnv Subviral Particle also contains other interesting chemical elements:

Cobalt (Co) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Ipnv Subviral Particle (pdb code 3ide). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Ipnv Subviral Particle, PDB code: 3ide:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3ide

Go back to Chlorine Binding Sites List in 3ide
Chlorine binding site 1 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl444

b:69.3
occ:1.00
N A:ALA200 3.3 66.4 1.0
CA A:ALA200 3.7 66.1 1.0
CD A:PRO201 4.2 71.5 1.0
CB A:ALA200 4.4 70.0 1.0
C A:ILE199 4.4 69.9 1.0
CA A:ILE199 4.8 70.8 1.0
C A:ALA200 4.9 70.2 1.0

Chlorine binding site 2 out of 3 in 3ide

Go back to Chlorine Binding Sites List in 3ide
Chlorine binding site 2 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl444

b:34.4
occ:0.33
N C:ALA200 3.2 68.8 1.0
CA C:ALA200 3.6 70.3 1.0
CD C:PRO201 4.2 69.1 1.0
CB C:ALA200 4.3 72.0 1.0
C C:ILE199 4.4 75.8 1.0
CA C:ILE199 4.7 75.2 1.0
C C:ALA200 4.9 70.7 1.0

Chlorine binding site 3 out of 3 in 3ide

Go back to Chlorine Binding Sites List in 3ide
Chlorine binding site 3 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl444

b:33.0
occ:0.33
N E:ALA200 3.2 61.4 1.0
CA E:ALA200 3.6 60.3 1.0
CD E:PRO201 4.1 57.5 1.0
CB E:ALA200 4.3 62.0 1.0
C E:ILE199 4.3 59.6 1.0
CA E:ILE199 4.7 61.8 1.0
C E:ALA200 4.8 59.5 1.0
N E:PRO201 5.0 59.0 1.0

Reference:

F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey. Crystal Structure of An Aquabirnavirus Particle: Insights Into Antigenic Diversity and Virulence Determinism J.Virol. V. 84 1792 2010.
ISSN: ISSN 0022-538X
PubMed: 20007275
DOI: 10.1128/JVI.01536-09
Page generated: Sat Jul 20 21:28:56 2024

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