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Chlorine in PDB 3ihp: Covalent Ubiquitin-USP5 Complex

Enzymatic activity of Covalent Ubiquitin-USP5 Complex

All present enzymatic activity of Covalent Ubiquitin-USP5 Complex:
3.1.2.15;

Protein crystallography data

The structure of Covalent Ubiquitin-USP5 Complex, PDB code: 3ihp was solved by J.R.Walker, G.V.Avvakumov, S.Xue, C.Butler-Cole, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.90 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.295, 188.845, 207.860, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 27.6

Other elements in 3ihp:

The structure of Covalent Ubiquitin-USP5 Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Covalent Ubiquitin-USP5 Complex (pdb code 3ihp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Covalent Ubiquitin-USP5 Complex, PDB code: 3ihp:

Chlorine binding site 1 out of 1 in 3ihp

Go back to Chlorine Binding Sites List in 3ihp
Chlorine binding site 1 out of 1 in the Covalent Ubiquitin-USP5 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Covalent Ubiquitin-USP5 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl77

b:84.9
occ:1.00
NE D:ARG74 3.5 57.9 1.0
NH2 D:ARG74 3.7 57.2 1.0
NH1 D:ARG72 3.9 55.0 1.0
CZ D:ARG74 4.1 59.0 1.0
CD D:ARG72 4.2 56.0 1.0
CD D:ARG74 4.6 58.2 1.0
CG D:ARG72 4.8 53.4 1.0
CZ D:ARG72 4.8 55.6 1.0
CB D:ARG72 4.9 53.5 1.0
NE D:ARG72 4.9 56.4 1.0

Reference:

J.R.Walker, G.V.Avvakumov, S.Xue, C.Butler-Cole, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon. Covalent Ubiquitin-USP5 Complex To Be Published.
Page generated: Sat Dec 12 09:47:57 2020

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