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Chlorine in PDB 3iii: 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus

Protein crystallography data

The structure of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus, PDB code: 3iii was solved by T.Osinski, M.Chruszcz, M.J.Domagalski, M.Cymborowski, I.A.Shumilin, T.Skarina, O.Onopriyenko, M.D.Zimmerman, A.Savchenko, A.Edwards, W.F.Anderson, W.Minor, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.14 / 1.95
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.498, 74.498, 210.681, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 18.3

Other elements in 3iii:

The structure of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus (pdb code 3iii). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus, PDB code: 3iii:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3iii

Go back to Chlorine Binding Sites List in 3iii
Chlorine binding site 1 out of 4 in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl562

b:22.9
occ:1.00
NZ A:LYS468 3.1 19.5 1.0
O A:HOH729 3.2 13.4 1.0
NE1 A:TRP475 3.3 11.7 1.0
NE2 A:GLN252 3.3 7.6 1.0
NH2 A:ARG200 3.4 11.0 1.0
NH1 A:ARG200 3.7 10.3 1.0
CE2 A:PHE244 3.7 13.3 1.0
CZ A:ARG200 3.7 11.4 1.0
CE2 A:TRP475 4.1 9.0 1.0
CE A:LYS468 4.1 16.8 1.0
CZ2 A:TRP475 4.2 7.3 1.0
CD A:GLN252 4.2 9.6 1.0
OE1 A:GLN252 4.2 9.9 1.0
CD A:LYS468 4.2 13.7 1.0
O A:HOH782 4.2 26.1 1.0
CZ A:PHE244 4.3 11.8 1.0
CD1 A:TRP475 4.3 9.3 1.0
CD2 A:PHE244 4.5 12.2 1.0
NE A:ARG200 4.6 7.3 1.0
O A:HOH855 4.7 22.8 1.0
OD2 A:ASP465 5.0 8.8 1.0

Chlorine binding site 2 out of 4 in 3iii

Go back to Chlorine Binding Sites List in 3iii
Chlorine binding site 2 out of 4 in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl563

b:32.0
occ:1.00
OH A:TYR397 3.1 14.7 1.0
N A:ASP400 3.1 10.8 1.0
O A:HOH921 3.2 23.3 1.0
CB A:ASP400 3.8 14.2 1.0
CA A:PHE399 3.9 9.6 1.0
CE2 A:TYR397 3.9 10.8 1.0
CZ A:TYR397 3.9 11.9 1.0
N A:LYS401 3.9 11.5 1.0
CA A:ASP400 3.9 12.7 1.0
CD1 A:PHE399 4.0 10.8 1.0
C A:PHE399 4.0 9.7 1.0
O A:HOH1106 4.2 30.9 1.0
CB A:PHE399 4.2 9.3 1.0
CG A:LYS401 4.3 15.8 1.0
C A:ASP400 4.3 11.7 1.0
CG A:PHE399 4.6 11.4 1.0
OG1 A:THR403 4.6 7.5 1.0
O A:LYS401 4.6 8.5 1.0
NZ A:LYS401 4.6 30.5 1.0
CG A:ASP400 4.7 22.1 1.0
OD2 A:ASP400 4.8 30.4 1.0
CE1 A:PHE399 4.9 10.4 1.0
CA A:LYS401 5.0 10.8 1.0
O A:THR398 5.0 7.3 1.0

Chlorine binding site 3 out of 4 in 3iii

Go back to Chlorine Binding Sites List in 3iii
Chlorine binding site 3 out of 4 in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl564

b:32.3
occ:1.00
O A:HOH1100 3.0 26.1 1.0
N A:HIS332 3.1 9.6 1.0
O A:HOH866 3.4 24.0 1.0
CD2 A:HIS332 3.5 22.1 1.0
CA A:SER350 3.5 9.0 1.0
CA A:PRO331 3.6 11.0 1.0
O A:ALA349 3.8 11.2 1.0
C A:PRO331 3.8 10.4 1.0
CB A:SER350 3.9 10.4 1.0
CG A:HIS332 4.1 12.8 1.0
CB A:HIS332 4.1 11.1 1.0
CB A:PRO331 4.2 11.6 1.0
N A:SER350 4.2 9.9 1.0
CA A:HIS332 4.2 9.9 1.0
C A:ALA349 4.3 9.9 1.0
NE2 A:HIS332 4.5 21.0 1.0
C A:SER350 4.5 9.6 1.0
O A:SER350 4.6 8.1 1.0
O A:THR330 4.8 8.1 1.0
N A:PRO331 4.8 10.1 1.0

Chlorine binding site 4 out of 4 in 3iii

Go back to Chlorine Binding Sites List in 3iii
Chlorine binding site 4 out of 4 in the 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl565

b:22.0
occ:1.00
OH A:TYR359 3.0 12.5 1.0
O A:HOH620 3.2 9.3 1.0
N A:ASN408 3.3 7.3 1.0
O A:HOH667 3.4 17.8 1.0
CE1 A:TYR359 3.6 10.6 1.0
CA A:GLY407 3.7 8.9 1.0
CB A:PRO353 3.7 9.9 1.0
CZ A:TYR359 3.8 13.8 1.0
C A:GLY407 4.0 7.8 1.0
CB A:ASN408 4.2 8.0 1.0
CG A:PRO353 4.2 11.3 1.0
ND2 A:ASN408 4.2 9.4 1.0
CA A:ASN408 4.2 7.3 1.0
O A:ASN408 4.4 7.2 1.0
CA A:PRO353 4.5 9.8 1.0
CZ A:PHE352 4.5 13.2 1.0
CB A:ALA472 4.5 6.7 1.0
O A:VAL406 4.6 6.4 1.0
CB A:PRO557 4.6 9.7 1.0
CG A:ASN408 4.7 10.1 1.0
C A:ASN408 4.8 7.2 1.0
N A:GLY407 4.9 7.2 1.0
CE1 A:PHE352 4.9 13.6 1.0
CD1 A:TYR359 4.9 11.1 1.0

Reference:

T.Osinski, M.Chruszcz, M.J.Domagalski, M.Cymborowski, I.A.Shumilin, T.Skarina, O.Onopriyenko, M.D.Zimmerman, A.Savchenko, A.Edwards, W.F.Anderson, W.Minor, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.95 Angstrom Crystal Structure of Coce/Nond Family Hydrolase (SACOL2612) From Staphylococcus Aureus To Be Published.
Page generated: Sat Jul 20 21:33:20 2024

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