Chlorine in PDB 3ivd: Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine

The structure of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine, PDB code: 3ivd was solved by U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	47.597, 67.281, 86.417, 74.04, 77.55, 83.76
R / Rfree (%)	16.7 / 21

The structure of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine also contains other interesting chemical elements:

Manganese	(Mn)	2 atoms
Iron	(Fe)	2 atoms

The binding sites of Chlorine atom in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine (pdb code 3ivd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine, PDB code: 3ivd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:19.8 occ:1.00 O A:HOH679 3.0 22.5 1.0 O A:HOH8 3.1 17.5 1.0 N A:GLY214 3.2 19.5 1.0 N A:ALA171 3.3 14.7 1.0 CA A:GLY168 3.6 16.2 1.0 CB A:ALA171 3.7 14.9 1.0 CB A:PHE170 3.7 18.4 1.0 CB A:GLU213 3.8 19.4 1.0 CE A:LYS233 3.9 24.7 1.0 C A:GLY168 3.9 16.4 1.0 N A:PHE170 3.9 15.7 1.0 CA A:GLU213 3.9 18.7 1.0 C A:GLU213 4.1 18.3 1.0 CA A:ALA171 4.1 15.6 1.0 CA A:PHE170 4.1 17.3 1.0 CA A:GLY214 4.1 19.7 1.0 C A:PHE170 4.2 16.1 1.0 CD2 A:PHE170 4.2 19.6 1.0 O A:GLY214 4.3 19.0 1.0 CG A:LYS233 4.3 23.5 1.0 N A:VAL169 4.3 15.3 1.0 O A:GLY168 4.4 15.5 1.0 OE2 A:GLU189 4.5 23.5 1.0 CG A:PHE170 4.5 20.2 1.0 CD A:LYS233 4.5 24.5 1.0 C A:GLY214 4.7 20.0 1.0 N A:GLY168 4.7 16.9 1.0 NZ A:LYS233 4.7 24.5 1.0 C A:VAL169 4.8 15.9 1.0 OE1 A:GLU213 4.9 21.6 1.0 CG A:GLU213 5.0 20.1 1.0

Chlorine binding site 2 out of 2 in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl604 b:16.9 occ:1.00 O B:HOH18 3.1 15.7 1.0 O B:HOH662 3.1 23.6 1.0 N B:GLY214 3.2 13.7 1.0 N B:ALA171 3.3 13.9 1.0 CA B:GLY168 3.6 13.2 1.0 CB B:ALA171 3.7 15.2 1.0 CB B:PHE170 3.8 16.0 1.0 CB B:GLU213 3.8 14.1 1.0 C B:GLY168 3.8 13.6 1.0 CE B:LYS233 3.8 22.5 1.0 N B:PHE170 3.9 13.2 1.0 CA B:GLU213 3.9 13.8 1.0 C B:GLU213 4.0 14.1 1.0 CA B:ALA171 4.1 13.3 1.0 CA B:PHE170 4.1 14.6 1.0 CA B:GLY214 4.1 15.3 1.0 C B:PHE170 4.1 14.5 1.0 N B:VAL169 4.2 12.7 1.0 O B:GLY168 4.2 12.0 1.0 CD2 B:PHE170 4.3 17.8 1.0 O B:GLY214 4.3 16.2 1.0 CG B:LYS233 4.4 18.9 1.0 OE2 B:GLU189 4.5 21.2 1.0 CG B:PHE170 4.5 16.3 1.0 NZ B:LYS233 4.6 23.4 1.0 CD B:LYS233 4.6 21.1 1.0 N B:GLY168 4.7 12.9 1.0 C B:GLY214 4.7 16.9 1.0 C B:VAL169 4.7 14.2 1.0 CG B:GLU213 4.9 16.4 1.0

U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo. Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Uridine To Be Published.