Chlorine in PDB 3jvg: Crystal Structure of Chicken CD1-1

The structure of Crystal Structure of Chicken CD1-1, PDB code: 3jvg was solved by H.Dvir, J.Wang, D.M.Zajonc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.06 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.839, 112.124, 201.773, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 25.2

The binding sites of Chlorine atom in the Crystal Structure of Chicken CD1-1 (pdb code 3jvg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Chicken CD1-1, PDB code: 3jvg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Chicken CD1-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Chicken CD1-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl284 b:33.2 occ:1.00 O C:HOH108 3.0 2.0 1.0 CD C:ARG11 3.5 20.2 1.0 N A:ASP239 3.6 19.2 1.0 O A:HOH376 3.6 8.2 1.0 NE C:ARG11 3.8 23.5 1.0 CG C:ARG11 3.9 20.4 1.0 CG A:ASP239 3.9 21.8 1.0 CB A:ASP239 3.9 20.2 1.0 N A:ALA238 3.9 18.8 1.0 CG2 C:VAL21 4.0 19.3 1.0 CB A:ALA238 4.0 21.4 1.0 OD1 A:ASP239 4.0 23.2 1.0 C A:ALA238 4.2 19.5 1.0 CA A:ALA238 4.2 19.4 1.0 CG1 C:VAL21 4.3 17.2 1.0 OD2 A:ASP239 4.3 26.4 1.0 CB C:VAL21 4.3 18.0 1.0 CA A:ASP239 4.4 20.1 1.0 CB C:ARG11 4.5 19.2 1.0 CB A:ASN237 4.6 18.1 1.0 C A:ASN237 4.9 18.6 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Chicken CD1-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Chicken CD1-1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl99 b:32.9 occ:1.00 O D:HOH114 3.1 2.0 1.0 CD D:ARG11 3.5 21.0 1.0 N B:ASP239 3.6 23.1 1.0 O B:HOH366 3.7 8.2 1.0 NE D:ARG11 3.8 23.7 1.0 CG B:ASP239 3.9 24.4 1.0 CG D:ARG11 3.9 21.2 1.0 CB B:ASP239 3.9 23.4 1.0 N B:ALA238 4.0 21.3 1.0 CB B:ALA238 4.0 24.8 1.0 OD1 B:ASP239 4.0 26.4 1.0 CG2 D:VAL21 4.1 19.9 1.0 OD2 B:ASP239 4.2 28.5 1.0 C B:ALA238 4.2 23.0 1.0 CA B:ALA238 4.2 22.8 1.0 CA B:ASP239 4.4 22.9 1.0 CG1 D:VAL21 4.4 17.7 1.0 CB D:VAL21 4.4 18.6 1.0 CB D:ARG11 4.5 20.0 1.0 CB B:ASN237 4.6 18.8 1.0 C B:ASN237 4.9 19.7 1.0 O D:HOH124 5.0 11.4 1.0

H.Dvir, J.Wang, N.Ly, C.C.Dascher, D.M.Zajonc. Structural Basis For Lipid-Antigen Recognition in Avian Immunity. J.Immunol. V. 184 2504 2010.
ISSN: ISSN 0022-1767
PubMed: 20100930
DOI: 10.4049/JIMMUNOL.0903509