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Chlorine in PDB 3jvo: Crystal Structure of Bacteriophage HK97 GP6

Protein crystallography data

The structure of Crystal Structure of Bacteriophage HK97 GP6, PDB code: 3jvo was solved by R.Lam, A.Tuite, K.P.Battaile, A.M.Edwards, K.L.Maxwell, N.Y.Chirgadze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.78 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 196.751, 200.211, 51.169, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Bacteriophage HK97 GP6 (pdb code 3jvo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Bacteriophage HK97 GP6, PDB code: 3jvo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3jvo

Go back to Chlorine Binding Sites List in 3jvo
Chlorine binding site 1 out of 2 in the Crystal Structure of Bacteriophage HK97 GP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Bacteriophage HK97 GP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl109

b:29.4
occ:1.00
O I:HOH120 3.1 35.2 1.0
N I:LEU11 3.2 27.2 1.0
CB I:LEU11 3.6 27.3 1.0
CA I:LEU11 4.0 27.5 1.0
CA I:SER10 4.0 26.8 1.0
CB I:SER10 4.1 27.1 1.0
C I:SER10 4.1 26.9 1.0
CB I:LEU6 4.2 28.2 1.0
CD1 I:LEU6 4.3 30.5 1.0
CG I:LEU6 4.6 29.3 1.0
CD2 I:LEU6 4.7 29.1 1.0
N I:SER12 4.8 27.2 1.0
O I:LEU6 4.8 29.1 1.0
C I:LEU11 5.0 27.2 1.0
CG I:LEU11 5.0 29.2 1.0

Chlorine binding site 2 out of 2 in 3jvo

Go back to Chlorine Binding Sites List in 3jvo
Chlorine binding site 2 out of 2 in the Crystal Structure of Bacteriophage HK97 GP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Bacteriophage HK97 GP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl109

b:27.1
occ:1.00
O L:HOH113 3.1 27.9 1.0
N L:LEU11 3.2 25.5 1.0
CB L:LEU11 3.6 26.2 1.0
CA L:SER10 4.0 24.9 1.0
CA L:LEU11 4.0 26.3 1.0
CB L:SER10 4.1 24.6 1.0
C L:SER10 4.1 24.9 1.0
CB L:LEU6 4.4 25.3 1.0
CD2 L:LEU6 4.4 28.4 1.0
CD1 L:LEU6 4.5 27.1 1.0
CG L:LEU6 4.6 27.2 1.0
N L:SER12 4.9 24.9 1.0
CG L:LEU11 4.9 30.1 1.0
O L:LEU6 5.0 25.4 1.0
CD2 L:LEU11 5.0 30.8 1.0

Reference:

L.Cardarelli, R.Lam, A.Tuite, L.A.Baker, P.D.Sadowski, D.R.Radford, J.L.Rubinstein, K.P.Battaile, N.Chirgadze, K.L.Maxwell, A.R.Davidson. The Crystal Structure of Bacteriophage HK97 GP6: Defining A Large Family of Head-Tail Connector Proteins. J.Mol.Biol. V. 395 754 2010.
ISSN: ISSN 0022-2836
PubMed: 19895817
DOI: 10.1016/J.JMB.2009.10.067
Page generated: Sat Dec 12 09:49:43 2020

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