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Chlorine in PDB 3jzd: Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution, PDB code: 3jzd was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.71 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.841, 143.841, 169.011, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 21

Other elements in 3jzd:

The structure of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution (pdb code 3jzd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution, PDB code: 3jzd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3jzd

Go back to Chlorine Binding Sites List in 3jzd
Chlorine binding site 1 out of 4 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl360

b:30.8
occ:1.00
O A:HOH479 2.9 32.5 1.0
O A:HOH433 3.2 15.1 1.0
N A:ALA293 3.4 17.6 1.0
CB A:MSE279 3.6 17.3 1.0
CD A:ARG283 3.6 19.8 1.0
CA A:SER292 3.7 18.0 1.0
CB A:SER292 3.8 18.2 1.0
CG A:MSE279 3.8 13.9 1.0
C A:SER292 4.1 18.1 1.0
CB A:ALA293 4.1 15.5 1.0
CA A:ALA293 4.4 16.8 1.0
CG A:ARG283 4.5 18.2 1.0
SE A:MSE279 4.5 16.2 0.8
O A:HOH466 4.5 22.9 1.0
CB A:ALA272 4.6 12.3 1.0
NE A:ARG283 4.6 20.2 1.0
O A:HOH428 4.7 44.1 1.0
CA A:MSE279 4.8 15.3 1.0
O A:HOH484 4.8 24.3 1.0
O A:HOH443 4.9 20.2 1.0
O A:MSE279 4.9 16.4 1.0
C A:MSE279 4.9 16.2 1.0
N A:SER292 5.0 16.4 1.0
N A:ALA294 5.0 16.4 1.0

Chlorine binding site 2 out of 4 in 3jzd

Go back to Chlorine Binding Sites List in 3jzd
Chlorine binding site 2 out of 4 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl358

b:29.3
occ:1.00
O B:HOH841 2.7 36.1 1.0
O B:HOH414 3.1 17.2 1.0
N B:ALA293 3.3 15.1 1.0
CD B:ARG283 3.6 18.3 1.0
CA B:SER292 3.6 18.0 1.0
CB B:MSE279 3.6 16.7 1.0
CB B:SER292 3.7 18.9 1.0
CG B:MSE279 3.9 18.0 1.0
C B:SER292 3.9 16.5 1.0
CB B:ALA293 4.1 11.1 1.0
CA B:ALA293 4.3 14.6 1.0
SE B:MSE279 4.3 16.0 0.8
CG B:ARG283 4.4 15.0 1.0
O B:HOH894 4.5 17.9 0.5
O B:HOH369 4.6 18.1 1.0
O B:HOH894 4.6 25.0 0.5
CB B:ALA272 4.6 15.0 1.0
NE B:ARG283 4.6 23.2 1.0
CA B:MSE279 4.8 15.9 1.0
O B:MSE279 4.9 17.4 1.0
O B:HOH375 4.9 27.7 1.0
O B:HOH456 4.9 20.3 1.0
N B:SER292 4.9 18.5 1.0
N B:ALA294 5.0 14.9 1.0
OG B:SER292 5.0 20.8 1.0
C B:MSE279 5.0 16.1 1.0

Chlorine binding site 3 out of 4 in 3jzd

Go back to Chlorine Binding Sites List in 3jzd
Chlorine binding site 3 out of 4 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl358

b:39.7
occ:1.00
O C:HOH521 2.8 34.9 1.0
O C:HOH379 3.1 17.3 1.0
N C:ALA293 3.2 18.5 1.0
CD C:ARG283 3.4 30.1 1.0
CB C:MSE279 3.6 17.4 1.0
CA C:SER292 3.7 21.2 1.0
CB C:SER292 3.8 21.2 1.0
CG C:MSE279 3.9 20.4 1.0
CB C:ALA293 4.0 16.5 1.0
C C:SER292 4.0 20.6 1.0
CA C:ALA293 4.2 18.0 1.0
CG C:ARG283 4.3 24.5 1.0
SE C:MSE279 4.3 21.7 0.8
NE C:ARG283 4.5 26.2 1.0
O C:HOH367 4.5 21.4 1.0
CB C:ALA272 4.6 17.1 1.0
O C:HOH700 4.7 42.1 1.0
CA C:MSE279 4.7 16.8 1.0
O C:MSE279 4.8 15.2 1.0
O C:HOH368 4.8 23.9 1.0
C C:MSE279 4.9 16.9 1.0
N C:ALA294 5.0 17.0 1.0
N C:SER292 5.0 23.5 1.0

Chlorine binding site 4 out of 4 in 3jzd

Go back to Chlorine Binding Sites List in 3jzd
Chlorine binding site 4 out of 4 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl358

b:29.7
occ:1.00
O D:HOH749 2.8 36.0 1.0
O D:HOH364 3.2 16.6 1.0
N D:ALA293 3.3 19.4 1.0
CD D:ARG283 3.4 28.8 1.0
CB D:MSE279 3.8 20.6 1.0
CA D:SER292 3.8 20.9 1.0
CB D:ALA293 3.9 17.8 1.0
CB D:SER292 3.9 22.5 1.0
C D:SER292 4.0 20.5 1.0
CG D:MSE279 4.1 24.6 1.0
CA D:ALA293 4.2 19.3 1.0
CG D:ARG283 4.4 24.1 1.0
SE D:MSE279 4.4 20.3 0.8
NE D:ARG283 4.4 29.9 1.0
CB D:ALA272 4.6 17.3 1.0
CA D:MSE279 4.8 19.3 1.0
O D:HOH453 4.9 19.9 1.0
O D:MSE279 4.9 19.1 1.0
NH1 D:ARG283 4.9 36.3 1.0
N D:ALA294 5.0 18.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 09:49:51 2020

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