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Chlorine in PDB 3jzt: Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose

Protein crystallography data

The structure of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose, PDB code: 3jzt was solved by J.A.Wojdyla, I.Manolaridis, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 3.91
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 220.236, 220.236, 220.236, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.9

Other elements in 3jzt:

The structure of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose (pdb code 3jzt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose, PDB code: 3jzt:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3jzt

Go back to Chlorine Binding Sites List in 3jzt
Chlorine binding site 1 out of 2 in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:53.0
occ:1.00
ND2 A:ASN108 3.2 29.9 1.0
CG A:ASN108 3.9 26.9 1.0
OD1 A:ASN108 4.5 31.9 1.0
CB A:ASN108 4.5 23.1 1.0
O A:ALA109 4.7 21.7 1.0

Chlorine binding site 2 out of 2 in 3jzt

Go back to Chlorine Binding Sites List in 3jzt
Chlorine binding site 2 out of 2 in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl2

b:41.2
occ:1.00
OE1 G:GLU191 3.2 43.9 1.0
OE2 G:GLU191 3.4 43.5 1.0
CA G:VAL186 3.6 26.1 1.0
CD G:GLU191 3.7 42.6 1.0
N G:TYR187 3.8 30.5 1.0
O G:PHE185 4.1 22.6 1.0
CG1 G:VAL186 4.1 26.1 1.0
CB G:VAL186 4.1 25.6 1.0
C G:VAL186 4.2 28.1 1.0
CD2 G:TYR187 4.5 38.6 1.0
N G:VAL186 4.7 24.4 1.0
CG G:TYR187 4.7 36.5 1.0
CB G:TYR187 4.8 33.7 1.0
C G:PHE185 4.8 22.9 1.0
CA G:TYR187 4.9 33.1 1.0
CB G:PRO155 4.9 15.9 1.0

Reference:

J.A.Wojdyla, I.Manolaridis, E.J.Snijder, A.E.Gorbalenya, B.Coutard, Y.Piotrowski, R.Hilgenfeld, P.A.Tucker. Structure of the X (Adrp) Domain of NSP3 From Feline Coronavirus Acta Crystallogr.,Sect.D V. 65 1292 2009.
ISSN: ISSN 0907-4449
PubMed: 19966415
DOI: 10.1107/S0907444909040074
Page generated: Sat Dec 12 09:49:55 2020

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