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Chlorine in PDB 3k28: Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate

Enzymatic activity of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate

All present enzymatic activity of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate:
5.4.3.8;

Protein crystallography data

The structure of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate, PDB code: 3k28 was solved by S.S.Sharma, J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.45 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 149.809, 113.688, 113.955, 90.00, 118.65, 90.00
R / Rfree (%) 14.7 / 18.5

Other elements in 3k28:

The structure of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate also contains other interesting chemical elements:

Calcium (Ca) 10 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate (pdb code 3k28). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate, PDB code: 3k28:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 1 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl432

b:31.4
occ:1.00
 O A:HOH505 3.0 14.5 1.0
O A:HOH911 3.2 42.1 1.0
N A:ASP370 3.6 27.0 1.0
CB A:ALA183 3.7 14.1 1.0
CB A:TYR369 3.8 22.9 1.0
CG2 A:ILE142 4.0 15.8 1.0
N A:TYR369 4.0 21.3 1.0
CB A:ASP370 4.1 30.1 1.0
CA A:ALA183 4.2 13.2 1.0
CA A:TYR369 4.3 22.0 1.0
CB A:ASN368 4.3 24.4 1.0
CB A:ILE142 4.3 15.5 1.0
C A:TYR369 4.4 28.1 1.0
CA A:ASP370 4.4 26.9 1.0
CG A:ASN368 4.6 44.2 1.0
OD1 A:ASN368 4.8 38.1 1.0
CD1 A:ILE142 4.8 24.2 1.0
C A:ASN368 4.9 23.7 1.0
CG A:TYR369 4.9 25.4 1.0
O A:ILE142 5.0 16.2 1.0
N A:TYR184 5.0 11.6 1.0

Chlorine binding site 2 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 2 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl433

b:31.9
occ:1.00
 O B:HOH486 2.9 20.7 1.0
N B:ASP370 3.6 29.4 1.0
CB B:ALA183 3.6 17.6 1.0
CB B:TYR369 3.9 26.4 1.0
CG2 B:ILE142 4.0 20.3 1.0
N B:TYR369 4.0 25.1 1.0
CB B:ASP370 4.1 32.1 1.0
CA B:ALA183 4.1 15.9 1.0
CA B:TYR369 4.3 25.6 1.0
CB B:ILE142 4.3 19.5 1.0
CB B:ASN368 4.3 27.6 1.0
C B:TYR369 4.4 32.2 1.0
CA B:ASP370 4.4 29.6 1.0
CG B:ASN368 4.5 50.6 1.0
ND2 B:ASN368 4.7 45.0 1.0
OD1 B:ASN368 4.8 41.2 1.0
CD1 B:ILE142 4.9 24.8 1.0
O B:ILE142 4.9 17.5 1.0
C B:ASN368 4.9 26.8 1.0
N B:TYR184 4.9 14.1 1.0

Chlorine binding site 3 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 3 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl432

b:25.4
occ:1.00
 O C:HOH812 2.9 33.6 1.0
O C:HOH454 3.1 18.6 1.0
O C:HOH891 3.2 39.7 1.0
N C:ASP370 3.3 21.5 1.0
CB C:ASP370 3.7 25.0 1.0
CB C:ALA183 3.7 17.0 1.0
N C:TYR369 3.9 20.2 1.0
CB C:TYR369 3.9 21.2 1.0
CG2 C:ILE142 4.1 19.8 1.0
CA C:ASP370 4.1 22.5 1.0
CB C:ASN368 4.1 19.3 1.0
CA C:TYR369 4.2 19.7 1.0
C C:TYR369 4.2 23.0 1.0
CA C:ALA183 4.2 15.9 1.0
CG C:ASN368 4.3 31.8 1.0
CB C:ILE142 4.3 18.3 1.0
OD1 C:ASN368 4.3 24.3 1.0
CD1 C:ILE142 4.7 23.7 1.0
C C:ASN368 4.7 22.6 1.0
O C:HOH1451 4.8 49.9 1.0
ND2 C:ASN368 5.0 26.7 1.0
O C:ILE142 5.0 18.6 1.0
N C:TYR184 5.0 15.5 1.0
CA C:ASN368 5.0 19.6 1.0

Chlorine binding site 4 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 4 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl433

b:29.4
occ:1.00
 O D:HOH450 3.1 19.4 1.0
N D:ASP370 3.4 27.6 1.0
CB D:ALA183 3.6 16.6 1.0
N D:TYR369 3.7 24.8 1.0
CB D:TYR369 3.8 28.0 1.0
CB D:ASP370 3.8 29.6 1.0
CB D:ASN368 4.0 23.2 1.0
CG2 D:ILE142 4.0 23.9 1.0
CA D:TYR369 4.1 25.8 1.0
CA D:ALA183 4.1 15.5 1.0
C D:TYR369 4.2 30.0 1.0
CA D:ASP370 4.2 27.2 1.0
CG D:ASN368 4.2 37.1 1.0
CB D:ILE142 4.4 21.0 1.0
OD1 D:ASN368 4.4 31.7 1.0
C D:ASN368 4.5 26.5 1.0
ND2 D:ASN368 4.7 32.1 1.0
CA D:ASN368 4.9 22.4 1.0
N D:TYR184 4.9 14.4 1.0
CD1 D:ILE142 5.0 32.1 1.0

Reference:

S.S.Sharma, J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate To Be Published.
Page generated: Sat Dec 12 09:50:06 2020

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