Atomistry » Chlorine » PDB 3k1s-3k9q » 3k28
Atomistry »
  Chlorine »
    PDB 3k1s-3k9q »
      3k28 »

Chlorine in PDB 3k28: Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate

Enzymatic activity of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate

All present enzymatic activity of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate:
5.4.3.8;

Protein crystallography data

The structure of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate, PDB code: 3k28 was solved by S.S.Sharma, J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.45 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 149.809, 113.688, 113.955, 90.00, 118.65, 90.00
R / Rfree (%) 14.7 / 18.5

Other elements in 3k28:

The structure of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate also contains other interesting chemical elements:

Calcium (Ca) 10 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate (pdb code 3k28). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate, PDB code: 3k28:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 1 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl432

b:31.4
occ:1.00
 O A:HOH505 3.0 14.5 1.0
O A:HOH911 3.2 42.1 1.0
N A:ASP370 3.6 27.0 1.0
CB A:ALA183 3.7 14.1 1.0
CB A:TYR369 3.8 22.9 1.0
CG2 A:ILE142 4.0 15.8 1.0
N A:TYR369 4.0 21.3 1.0
CB A:ASP370 4.1 30.1 1.0
CA A:ALA183 4.2 13.2 1.0
CA A:TYR369 4.3 22.0 1.0
CB A:ASN368 4.3 24.4 1.0
CB A:ILE142 4.3 15.5 1.0
C A:TYR369 4.4 28.1 1.0
CA A:ASP370 4.4 26.9 1.0
CG A:ASN368 4.6 44.2 1.0
OD1 A:ASN368 4.8 38.1 1.0
CD1 A:ILE142 4.8 24.2 1.0
C A:ASN368 4.9 23.7 1.0
CG A:TYR369 4.9 25.4 1.0
O A:ILE142 5.0 16.2 1.0
N A:TYR184 5.0 11.6 1.0

Chlorine binding site 2 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 2 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl433

b:31.9
occ:1.00
 O B:HOH486 2.9 20.7 1.0
N B:ASP370 3.6 29.4 1.0
CB B:ALA183 3.6 17.6 1.0
CB B:TYR369 3.9 26.4 1.0
CG2 B:ILE142 4.0 20.3 1.0
N B:TYR369 4.0 25.1 1.0
CB B:ASP370 4.1 32.1 1.0
CA B:ALA183 4.1 15.9 1.0
CA B:TYR369 4.3 25.6 1.0
CB B:ILE142 4.3 19.5 1.0
CB B:ASN368 4.3 27.6 1.0
C B:TYR369 4.4 32.2 1.0
CA B:ASP370 4.4 29.6 1.0
CG B:ASN368 4.5 50.6 1.0
ND2 B:ASN368 4.7 45.0 1.0
OD1 B:ASN368 4.8 41.2 1.0
CD1 B:ILE142 4.9 24.8 1.0
O B:ILE142 4.9 17.5 1.0
C B:ASN368 4.9 26.8 1.0
N B:TYR184 4.9 14.1 1.0

Chlorine binding site 3 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 3 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl432

b:25.4
occ:1.00
 O C:HOH812 2.9 33.6 1.0
O C:HOH454 3.1 18.6 1.0
O C:HOH891 3.2 39.7 1.0
N C:ASP370 3.3 21.5 1.0
CB C:ASP370 3.7 25.0 1.0
CB C:ALA183 3.7 17.0 1.0
N C:TYR369 3.9 20.2 1.0
CB C:TYR369 3.9 21.2 1.0
CG2 C:ILE142 4.1 19.8 1.0
CA C:ASP370 4.1 22.5 1.0
CB C:ASN368 4.1 19.3 1.0
CA C:TYR369 4.2 19.7 1.0
C C:TYR369 4.2 23.0 1.0
CA C:ALA183 4.2 15.9 1.0
CG C:ASN368 4.3 31.8 1.0
CB C:ILE142 4.3 18.3 1.0
OD1 C:ASN368 4.3 24.3 1.0
CD1 C:ILE142 4.7 23.7 1.0
C C:ASN368 4.7 22.6 1.0
O C:HOH1451 4.8 49.9 1.0
ND2 C:ASN368 5.0 26.7 1.0
O C:ILE142 5.0 18.6 1.0
N C:TYR184 5.0 15.5 1.0
CA C:ASN368 5.0 19.6 1.0

Chlorine binding site 4 out of 4 in 3k28

Go back to Chlorine Binding Sites List in 3k28
Chlorine binding site 4 out of 4 in the Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl433

b:29.4
occ:1.00
 O D:HOH450 3.1 19.4 1.0
N D:ASP370 3.4 27.6 1.0
CB D:ALA183 3.6 16.6 1.0
N D:TYR369 3.7 24.8 1.0
CB D:TYR369 3.8 28.0 1.0
CB D:ASP370 3.8 29.6 1.0
CB D:ASN368 4.0 23.2 1.0
CG2 D:ILE142 4.0 23.9 1.0
CA D:TYR369 4.1 25.8 1.0
CA D:ALA183 4.1 15.5 1.0
C D:TYR369 4.2 30.0 1.0
CA D:ASP370 4.2 27.2 1.0
CG D:ASN368 4.2 37.1 1.0
CB D:ILE142 4.4 21.0 1.0
OD1 D:ASN368 4.4 31.7 1.0
C D:ASN368 4.5 26.5 1.0
ND2 D:ASN368 4.7 32.1 1.0
CA D:ASN368 4.9 22.4 1.0
N D:TYR184 4.9 14.4 1.0
CD1 D:ILE142 5.0 32.1 1.0

Reference:

S.S.Sharma, J.S.Brunzelle, Z.Wawrzak, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis with Bound Pyridoxal 5'Phosphate To Be Published.
Page generated: Sat Jul 20 22:20:48 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy