Chlorine in PDB 3k2k: Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
Protein crystallography data
The structure of Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution, PDB code: 3k2k
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.55 /
2.49
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
162.375,
162.375,
148.397,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.6 /
18.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
(pdb code 3k2k). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution, PDB code: 3k2k:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3k2k
Go back to
Chlorine Binding Sites List in 3k2k
Chlorine binding site 1 out
of 4 in the Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl385
b:64.8
occ:1.00
|
OD1
|
A:ASP311
|
3.1
|
40.6
|
0.5
|
N
|
A:ASP311
|
3.1
|
35.0
|
1.0
|
CE
|
A:LYS303
|
3.6
|
45.3
|
1.0
|
CB
|
A:GLN310
|
3.6
|
27.6
|
1.0
|
CA
|
A:GLN310
|
3.7
|
30.7
|
1.0
|
N
|
A:GLU312
|
3.8
|
37.4
|
1.0
|
C
|
A:GLN310
|
3.9
|
31.6
|
1.0
|
NZ
|
A:LYS303
|
3.9
|
55.2
|
1.0
|
CG
|
A:ASP311
|
4.1
|
37.8
|
0.5
|
CA
|
A:ASP311
|
4.1
|
36.3
|
0.5
|
CA
|
A:ASP311
|
4.1
|
36.7
|
0.5
|
C
|
A:ASP311
|
4.3
|
37.1
|
1.0
|
CB
|
A:ASP311
|
4.4
|
36.0
|
0.5
|
CB
|
A:GLU312
|
4.4
|
41.3
|
1.0
|
CD
|
A:LYS303
|
4.5
|
45.0
|
1.0
|
O
|
A:HOH419
|
4.6
|
34.3
|
1.0
|
CB
|
A:ASP311
|
4.6
|
36.6
|
0.5
|
CA
|
A:GLU312
|
4.7
|
39.2
|
1.0
|
OE1
|
A:GLN310
|
4.8
|
28.1
|
1.0
|
O
|
A:HOH516
|
4.8
|
41.5
|
1.0
|
CG
|
A:LYS303
|
4.8
|
42.0
|
1.0
|
CG
|
A:GLN310
|
4.9
|
29.9
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3k2k
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Chlorine Binding Sites List in 3k2k
Chlorine binding site 2 out
of 4 in the Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl386
b:69.4
occ:1.00
|
OG
|
A:SER7
|
3.1
|
24.9
|
1.0
|
O
|
A:HOH515
|
3.4
|
36.0
|
1.0
|
N
|
A:ILE14
|
3.5
|
29.8
|
1.0
|
CA
|
A:ALA13
|
3.5
|
27.9
|
1.0
|
CD
|
A:ARG30
|
3.7
|
27.1
|
1.0
|
O
|
A:HOH446
|
3.7
|
51.5
|
1.0
|
O
|
A:ILE14
|
3.7
|
35.1
|
1.0
|
NH1
|
A:ARG30
|
3.7
|
34.9
|
1.0
|
O
|
A:GLY12
|
4.0
|
26.2
|
1.0
|
C
|
A:ALA13
|
4.0
|
27.6
|
1.0
|
CB
|
A:SER7
|
4.1
|
29.2
|
1.0
|
N
|
A:ALA13
|
4.1
|
28.5
|
1.0
|
O
|
A:HOH509
|
4.1
|
63.2
|
1.0
|
C
|
A:GLY12
|
4.2
|
28.7
|
1.0
|
O
|
A:SER7
|
4.3
|
27.0
|
1.0
|
C
|
A:ILE14
|
4.6
|
32.5
|
1.0
|
CG
|
A:ARG30
|
4.6
|
30.1
|
1.0
|
NE
|
A:ARG30
|
4.6
|
34.3
|
1.0
|
CB
|
A:ALA13
|
4.6
|
24.8
|
1.0
|
CZ
|
A:ARG30
|
4.6
|
26.5
|
1.0
|
CA
|
A:ILE14
|
4.6
|
30.4
|
1.0
|
C
|
A:SER7
|
4.9
|
25.9
|
1.0
|
CB
|
A:ARG30
|
5.0
|
28.5
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3k2k
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Chlorine Binding Sites List in 3k2k
Chlorine binding site 3 out
of 4 in the Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl387
b:67.8
occ:1.00
|
NH1
|
A:ARG236
|
2.8
|
57.4
|
1.0
|
ND2
|
A:ASN235
|
3.3
|
22.7
|
1.0
|
CE1
|
A:HIS171
|
3.4
|
38.8
|
1.0
|
NH2
|
A:ARG226
|
3.4
|
51.8
|
1.0
|
NH2
|
A:ARG236
|
3.5
|
51.2
|
1.0
|
CZ
|
A:ARG236
|
3.6
|
45.7
|
1.0
|
NE2
|
A:HIS171
|
4.0
|
25.4
|
1.0
|
CB
|
A:ASN235
|
4.0
|
33.1
|
1.0
|
CG
|
A:ASN235
|
4.1
|
36.6
|
1.0
|
OH
|
A:TYR320
|
4.3
|
73.8
|
1.0
|
CZ
|
A:TYR320
|
4.4
|
74.5
|
1.0
|
CZ
|
A:ARG226
|
4.5
|
56.8
|
1.0
|
CD2
|
A:LEU327
|
4.6
|
33.9
|
1.0
|
ND1
|
A:HIS171
|
4.6
|
39.7
|
1.0
|
CG
|
A:LEU327
|
4.6
|
36.8
|
1.0
|
O
|
A:HOH538
|
4.7
|
41.1
|
1.0
|
CE1
|
A:HIS268
|
4.7
|
50.3
|
1.0
|
NH1
|
A:ARG226
|
4.7
|
57.7
|
1.0
|
CE2
|
A:TYR320
|
4.7
|
76.0
|
1.0
|
O
|
A:ASN235
|
4.8
|
34.9
|
1.0
|
CE1
|
A:TYR320
|
4.9
|
77.7
|
1.0
|
NE
|
A:ARG236
|
4.9
|
39.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3k2k
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Chlorine Binding Sites List in 3k2k
Chlorine binding site 4 out
of 4 in the Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Putative Carboxypeptidase (YP_103406.1) From Burkholderia Mallei Atcc 23344 at 2.49 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl388
b:54.0
occ:0.50
|
NH2
|
A:ARG335
|
3.1
|
28.5
|
1.0
|
NH1
|
A:ARG335
|
3.2
|
30.9
|
1.0
|
CZ
|
A:ARG335
|
3.6
|
27.5
|
1.0
|
O
|
A:HOH464
|
3.7
|
25.0
|
1.0
|
CE1
|
A:PHE336
|
3.8
|
26.6
|
1.0
|
CD1
|
A:PHE336
|
4.0
|
29.1
|
1.0
|
NE
|
A:ARG335
|
4.9
|
32.8
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 22:22:11 2024
|