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Chlorine in PDB 3kia: Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus

Enzymatic activity of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus

All present enzymatic activity of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus:
2.4.1.217;

Protein crystallography data

The structure of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus, PDB code: 3kia was solved by S.Macedo-Ribeiro, P.J.B.Pereira, N.Empadinhas, M.S.Da Costa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.70 / 2.80
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.010, 109.010, 313.418, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 23.9

Other elements in 3kia:

The structure of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus (pdb code 3kia). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus, PDB code: 3kia:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3kia

Go back to Chlorine Binding Sites List in 3kia
Chlorine binding site 1 out of 3 in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl337

b:58.2
occ:1.00
N A:LEU322 3.3 56.0 1.0
NH1 A:ARG273 3.4 40.3 1.0
NH2 A:ARG273 3.6 39.5 1.0
CG A:GLU321 3.9 80.2 1.0
CA A:GLU321 4.0 76.8 1.0
CZ A:ARG273 4.0 38.7 1.0
CB A:LEU322 4.1 51.7 1.0
C A:GLU321 4.1 75.0 1.0
CA A:LEU322 4.2 54.6 1.0
CB A:SER301 4.2 57.5 1.0
O A:LEU322 4.4 56.3 1.0
CB A:GLU321 4.5 80.3 1.0
N A:SER301 4.5 52.4 1.0
C A:LEU322 4.6 56.6 1.0
CA A:SER301 4.6 54.1 1.0
OG A:SER301 4.7 58.5 1.0
CB A:LEU300 5.0 44.0 1.0

Chlorine binding site 2 out of 3 in 3kia

Go back to Chlorine Binding Sites List in 3kia
Chlorine binding site 2 out of 3 in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl338

b:48.8
occ:1.00
O A:HOH383 3.0 33.2 1.0
NH2 A:ARG273 3.1 39.5 1.0
NH1 A:ARG277 3.1 47.1 1.0
CD A:ARG277 3.4 43.9 1.0
CD1 A:LEU300 4.0 42.6 1.0
CZ A:ARG277 4.0 46.7 1.0
NE A:ARG277 4.1 45.1 1.0
CB A:ARG277 4.2 40.4 1.0
CZ A:ARG273 4.2 38.7 1.0
CD2 A:LEU322 4.4 48.2 1.0
CG A:ARG277 4.4 42.4 1.0
CA A:ARG277 4.5 39.6 1.0
NE A:ARG273 4.5 36.5 1.0
CD2 A:LEU288 4.7 63.8 1.0
N A:ARG277 5.0 37.8 1.0

Chlorine binding site 3 out of 3 in 3kia

Go back to Chlorine Binding Sites List in 3kia
Chlorine binding site 3 out of 3 in the Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl337

b:68.5
occ:1.00
O C:HOH350 3.3 42.2 1.0
N C:LEU322 3.9 54.5 1.0
NH2 C:ARG273 4.0 50.7 1.0
CB C:SER301 4.0 69.4 1.0
NH1 C:ARG273 4.0 53.5 1.0
O C:LEU322 4.2 53.9 1.0
OG C:SER301 4.3 68.8 1.0
CG C:GLU321 4.4 0.3 1.0
CZ C:ARG273 4.5 51.5 1.0
CA C:GLU321 4.6 0.7 1.0
CA C:LEU322 4.7 52.7 1.0
CB C:LEU322 4.7 54.4 1.0
C C:GLU321 4.8 0.9 1.0
N C:SER301 4.8 68.0 1.0
C C:LEU322 4.9 52.0 1.0
CA C:SER301 4.9 69.4 1.0

Reference:

N.Empadinhas, P.J.B.Pereira, L.Albuquerque, J.Costa, B.Sa-Moura, A.T.Marques, S.Macedo-Ribeiro, M.S.Da Costa. Functional and Structural Characterization of A Novel Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus Reveals Its Dual Substrate Specificity Mol.Microbiol. V. 79 76 2011.
ISSN: ISSN 0950-382X
PubMed: 21166895
DOI: 10.1111/J.1365-2958.2010.07432.X
Page generated: Fri Jul 11 07:00:35 2025

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