Atomistry » Chlorine » PDB 3khi-3ktc » 3kk7
Atomistry »
  Chlorine »
    PDB 3khi-3ktc »
      3kk7 »

Chlorine in PDB 3kk7: Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution, PDB code: 3kk7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.46
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.400, 127.200, 138.250, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution (pdb code 3kk7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution, PDB code: 3kk7:

Chlorine binding site 1 out of 1 in 3kk7

Go back to Chlorine Binding Sites List in 3kk7
Chlorine binding site 1 out of 1 in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:52.0
occ:1.00
ND2 A:ASN332 3.2 22.7 1.0
N A:ASP329 3.4 28.4 1.0
CB A:ASN332 4.0 26.3 1.0
CA A:TYR328 4.0 28.6 1.0
CB A:ASP329 4.1 28.8 1.0
CG A:ASN332 4.1 25.8 1.0
CD1 A:TYR328 4.2 33.7 1.0
C A:TYR328 4.2 28.3 1.0
CB A:TYR328 4.3 29.3 1.0
CA A:ASP329 4.3 28.8 1.0
CB A:TYR333 4.3 28.9 1.0
O A:ASP329 4.5 29.2 1.0
CG A:TYR328 4.8 31.4 1.0
N A:TYR333 4.8 27.9 1.0
C A:ASP329 4.9 29.1 1.0

Reference:

Q.Xu, P.Abdubek, T.Astakhova, H.L.Axelrod, C.Bakolitsa, X.Cai, D.Carlton, C.Chen, H.J.Chiu, T.Clayton, D.Das, M.C.Deller, L.Duan, K.Ellrott, C.L.Farr, J.Feuerhelm, J.C.Grant, A.Grzechnik, G.W.Han, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, A.Kumar, W.W.Lam, D.Marciano, M.D.Miller, A.T.Morse, E.Nigoghossian, A.Nopakun, L.Okach, C.Puckett, R.Reyes, H.J.Tien, C.B.Trame, H.Van Den Bedem, D.Weekes, T.Wooten, A.Yeh, J.Zhou, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Structure of A Membrane-Attack Complex/Perforin (Macpf) Family Protein From the Human Gut Symbiont Bacteroides Thetaiotaomicron. Acta Crystallogr.,Sect.F V. 66 1297 2010.
ISSN: ESSN 1744-3091
PubMed: 20944225
DOI: 10.1107/S1744309110023055
Page generated: Sat Jul 20 22:42:42 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy