Atomistry » Chlorine » PDB 3ktf-3l28 » 3kur
Atomistry »
  Chlorine »
    PDB 3ktf-3l28 »
      3kur »

Chlorine in PDB 3kur: Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein

Protein crystallography data

The structure of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein, PDB code: 3kur was solved by G.Kozlov, K.Gehring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 146.977, 146.977, 83.055, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 27.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein (pdb code 3kur). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein, PDB code: 3kur:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3kur

Go back to Chlorine Binding Sites List in 3kur
Chlorine binding site 1 out of 5 in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3

b:53.1
occ:1.00
 OG1 A:THR576 2.7 34.9 1.0
N A:THR576 3.6 32.4 1.0
ND1 A:HIS574 3.8 29.3 1.0
CA A:HIS574 3.8 30.4 1.0
CB A:THR576 3.9 33.4 1.0
C A:HIS574 3.9 30.8 1.0
CB A:HIS574 4.0 29.3 1.0
N A:PRO575 4.1 31.1 1.0
CD A:PRO575 4.2 30.8 1.0
CA A:THR576 4.2 33.1 1.0
N A:LEU577 4.3 32.3 1.0
CG A:HIS574 4.4 29.9 1.0
CG A:PRO575 4.5 31.7 1.0
O A:HIS574 4.5 32.0 1.0
CG2 A:THR576 4.5 32.7 1.0
C A:PRO575 4.6 32.1 1.0
C A:THR576 4.7 32.9 1.0
CG A:LEU577 4.8 33.0 1.0
CA A:PRO575 4.9 31.6 1.0
CE1 A:HIS574 4.9 28.6 1.0

Chlorine binding site 2 out of 5 in 3kur

Go back to Chlorine Binding Sites List in 3kur
Chlorine binding site 2 out of 5 in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl5

b:62.0
occ:1.00
 N E:ASN590 3.2 21.1 1.0
NZ B:LYS580 3.2 29.0 1.0
CA E:ASP589 3.5 23.0 1.0
CE B:LYS580 3.5 29.4 1.0
CG E:ASN590 3.7 17.8 1.0
OD1 E:ASN590 3.7 12.9 1.0
CB E:ASP589 3.8 24.3 1.0
C E:ASP589 3.8 22.1 1.0
O E:HOH59 3.9 42.5 1.0
CB E:ASN590 4.1 19.1 1.0
ND2 E:ASN590 4.1 16.8 1.0
CA E:ASN590 4.2 19.3 1.0
NZ E:LYS559 4.3 20.6 1.0
N E:ASP589 4.6 22.1 1.0
O E:ILE588 4.7 21.0 1.0
CD B:LYS580 5.0 26.6 1.0
CE E:LYS559 5.0 19.9 1.0

Chlorine binding site 3 out of 5 in 3kur

Go back to Chlorine Binding Sites List in 3kur
Chlorine binding site 3 out of 5 in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl2

b:62.1
occ:1.00
 OG1 E:THR576 2.9 31.7 1.0
ND1 E:HIS574 3.8 26.5 1.0
N E:THR576 4.0 27.8 1.0
CA E:HIS574 4.0 25.7 1.0
CB E:THR576 4.0 29.5 1.0
CB E:HIS574 4.1 25.6 1.0
CG2 E:THR576 4.2 28.4 1.0
C E:HIS574 4.2 25.6 1.0
N E:PRO575 4.3 25.7 1.0
CD E:PRO575 4.3 25.2 1.0
N E:LEU577 4.3 28.2 1.0
CG E:LEU577 4.4 28.3 1.0
CG E:HIS574 4.4 25.4 1.0
CA E:THR576 4.5 28.6 1.0
CD1 E:LEU577 4.6 26.9 1.0
O E:HIS574 4.7 24.8 1.0
CE1 E:HIS574 4.9 27.1 1.0
CB E:LEU577 4.9 27.3 1.0
C E:THR576 4.9 29.0 1.0
C E:PRO575 5.0 27.1 1.0

Chlorine binding site 4 out of 5 in 3kur

Go back to Chlorine Binding Sites List in 3kur
Chlorine binding site 4 out of 5 in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1

b:67.3
occ:1.00
 O G:HOH75 2.3 56.5 1.0
OG1 G:THR576 2.5 39.9 1.0
N G:THR576 3.5 38.0 1.0
ND1 G:HIS574 3.7 38.1 1.0
CB G:THR576 3.8 38.0 1.0
CA G:THR576 4.1 37.8 1.0
C G:HIS574 4.1 37.9 1.0
N G:PRO575 4.3 38.3 1.0
O G:HIS574 4.3 39.1 1.0
CE1 G:HIS574 4.3 40.7 1.0
N G:LEU577 4.4 34.7 1.0
CD G:PRO575 4.5 38.3 1.0
CA G:HIS574 4.6 36.8 1.0
CG2 G:THR576 4.6 38.7 1.0
C G:PRO575 4.6 38.4 1.0
CG G:HIS574 4.7 37.4 1.0
C G:THR576 4.7 36.6 1.0
CA G:PRO575 4.9 38.4 1.0
CB G:HIS574 4.9 36.5 1.0

Chlorine binding site 5 out of 5 in 3kur

Go back to Chlorine Binding Sites List in 3kur
Chlorine binding site 5 out of 5 in the Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Mlle Domain of Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl4

b:56.1
occ:1.00
 OG1 H:THR576 3.0 35.4 1.0
ND1 H:HIS574 3.9 30.2 1.0
CA H:HIS574 4.1 30.9 1.0
CB H:HIS574 4.1 30.7 1.0
N H:THR576 4.1 33.8 1.0
C H:HIS574 4.2 31.6 1.0
CD H:PRO575 4.3 32.2 1.0
CB H:THR576 4.3 34.8 1.0
N H:PRO575 4.3 32.3 1.0
CD2 H:LEU577 4.5 28.3 1.0
CG H:HIS574 4.5 30.4 1.0
N H:LEU577 4.6 32.7 1.0
CA H:THR576 4.7 34.1 1.0
O H:HIS574 4.7 32.4 1.0
CE1 H:HIS574 5.0 29.5 1.0

Reference:

G.Kozlov, M.Menade, A.Rosenauer, L.Nguyen, K.Gehring. Molecular Determinants of PAM2 Recognition By the Mlle Domain of Poly(A)-Binding Protein. J.Mol.Biol. V. 397 397 2010.
ISSN: ISSN 0022-2836
PubMed: 20096703
DOI: 10.1016/J.JMB.2010.01.032
Page generated: Sat Jul 20 22:51:12 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy