Chlorine in PDB 3l12: Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution

The structure of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3l12 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.28 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.409, 136.411, 50.548, 90.00, 118.00, 90.00
R / Rfree (%)	15.6 / 18.7

The structure of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Chlorine atom in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution (pdb code 3l12). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3l12:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl314 b:27.4 occ:1.00 O A:HOH659 2.9 20.7 1.0 O A:HOH396 3.2 11.8 1.0 O A:HOH341 3.2 22.4 1.0 N A:VAL109 3.3 6.0 1.0 CA A:THR108 3.5 8.0 1.0 CB A:THR108 3.7 6.4 1.0 CG2 A:VAL109 3.7 11.1 1.0 O A:HOH331 3.8 6.5 1.0 C A:THR108 3.9 7.6 1.0 O A:HOH432 4.0 13.4 1.0 CG2 A:THR108 4.2 6.4 1.0 CB A:VAL109 4.2 9.6 1.0 CA A:VAL109 4.4 8.6 1.0 O A:ARG107 4.5 9.2 1.0 N A:THR108 4.7 7.6 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl315 b:37.6 occ:1.00 O A:HOH401 2.8 12.0 1.0 NH2 A:ARG113 3.0 12.6 0.7 NH1 A:ARG26 3.0 8.7 1.0 O A:HOH388 3.3 11.4 1.0 NH1 A:ARG113 3.3 13.8 0.7 NH2 A:ARG26 3.5 9.8 1.0 CZ A:ARG113 3.6 11.5 0.7 CZ A:ARG26 3.7 9.8 1.0 O A:HOH637 4.0 33.8 1.0 NH2 A:ARG23 4.2 9.6 1.0 NH2 A:ARG113 4.4 17.4 0.3 CE1 A:TYR110 4.6 9.8 1.0 NH1 A:ARG23 4.7 6.9 1.0 O A:HOH543 4.8 29.6 1.0 CZ A:ARG23 4.8 8.2 1.0 NE A:ARG113 4.9 13.6 0.7 O A:HOH466 5.0 26.8 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl316 b:46.6 occ:1.00 O A:HOH476 2.6 27.2 1.0 O A:HOH404 2.8 12.1 1.0 OXT A:THR312 3.4 16.7 0.5 NH1 A:ARG18 3.6 13.4 1.0 CB A:ARG46 3.8 10.7 1.0 CG A:ARG46 4.1 15.6 1.0 CE1 A:TYR144 4.2 10.7 1.0 C A:THR312 4.2 13.2 0.5 CA A:GLY9 4.3 11.7 1.0 NE A:ARG46 4.3 24.1 1.0 CA A:THR312 4.3 12.8 0.5 O A:TRP311 4.4 10.6 1.0 CD1 A:TYR144 4.5 8.8 1.0 O A:GLY9 4.5 12.1 1.0 CZ A:ARG18 4.6 12.8 1.0 O A:HOH358 4.6 8.7 1.0 CG2 A:THR312 4.6 14.9 0.5 CG2 A:THR312 4.6 16.6 0.5 CD A:ARG46 4.8 19.4 1.0 CA A:THR312 4.9 14.4 0.5 C A:GLY9 4.9 10.9 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl315 b:29.2 occ:1.00 O B:HOH396 3.1 24.3 1.0 O B:HOH462 3.1 15.7 1.0 NH2 B:ARG174 3.2 19.6 1.0 NE B:ARG174 3.3 16.0 1.0 CZ B:ARG174 3.7 16.9 1.0 CG B:GLU179 3.8 11.5 1.0 CG B:LEU202 3.9 13.0 1.0 CD2 B:LEU202 4.0 14.7 1.0 CB B:ALA199 4.2 9.6 1.0 CD1 B:LEU202 4.3 12.6 1.0 CD B:ARG174 4.4 13.4 1.0 CG B:ARG174 4.4 10.7 1.0 CB B:ASP201 4.5 21.2 1.0 CB B:GLU179 4.6 10.3 1.0 CA B:ALA199 4.6 10.1 1.0 OE2 B:GLU179 4.7 13.2 1.0 O B:HOH385 4.7 23.9 1.0 CD B:GLU179 4.8 12.1 1.0 OD2 B:ASP201 4.9 29.8 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (YP_165505.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl316 b:41.4 occ:1.00 NH2 B:ARG113 3.0 13.6 0.5 NH1 B:ARG113 3.0 13.3 0.5 O B:HOH340 3.1 8.3 1.0 NH1 B:ARG26 3.2 8.3 1.0 NH2 B:ARG26 3.3 9.0 1.0 O B:HOH381 3.5 11.0 1.0 NH1 B:ARG113 3.6 15.5 0.5 O B:HOH643 3.6 34.2 1.0 CZ B:ARG26 3.7 7.8 1.0 CZ B:ARG113 3.7 14.3 0.5 O B:HOH423 4.0 25.2 1.0 CZ B:ARG113 4.1 13.2 0.5 NH2 B:ARG23 4.1 9.0 1.0 O B:HOH444 4.2 14.0 1.0 NH2 B:ARG113 4.3 13.7 0.5 CZ B:ARG23 4.9 8.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.