Atomistry » Chlorine » PDB 3l2h-3lcc » 3l2u
Atomistry »
  Chlorine »
    PDB 3l2h-3lcc »
      3l2u »

Chlorine in PDB 3l2u: Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir)

Protein crystallography data

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir), PDB code: 3l2u was solved by S.Hare, S.S.Gupta, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.44 / 3.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 157.100, 157.100, 124.530, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.8

Other elements in 3l2u:

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir) also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 3 atoms
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir) (pdb code 3l2u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir), PDB code: 3l2u:

Chlorine binding site 1 out of 1 in 3l2u

Go back to Chlorine Binding Sites List in 3l2u
Chlorine binding site 1 out of 1 in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Magnesium and GS9137 (Elvitegravir) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl397

b:88.2
occ:1.00
CLAI A:ELV397 0.0 88.2 1.0
CAT A:ELV397 1.7 80.2 1.0
CAK A:ELV397 2.5 80.8 1.0
CAU A:ELV397 2.8 76.4 1.0
N1 C:DG4 3.1 78.4 1.0
FAH A:ELV397 3.2 70.4 1.0
C2 C:DG4 3.3 78.1 1.0
C6 C:DG4 3.5 77.7 1.0
N3 D:DC16 3.6 73.3 1.0
N2 C:DG4 3.8 79.3 1.0
CAJ A:ELV397 3.8 81.7 1.0
N3 C:DG4 3.8 78.0 1.0
C4 D:DC16 3.8 72.4 1.0
N A:GLN215 3.9 88.2 1.0
N4 D:DC16 3.9 70.5 1.0
C5 C:DG4 3.9 76.4 1.0
CA A:GLN215 4.0 89.0 1.0
O6 C:DG4 4.0 78.9 1.0
CAV A:ELV397 4.0 75.2 1.0
C A:PRO214 4.0 86.9 1.0
C4 C:DG4 4.0 76.3 1.0
C2 D:DC16 4.1 76.4 1.0
O A:PRO214 4.2 86.3 1.0
CB A:PRO214 4.2 85.8 1.0
CG A:GLN215 4.3 93.4 1.0
CAL A:ELV397 4.4 78.7 1.0
O2 D:DC16 4.5 74.7 1.0
OE1 A:GLN215 4.5 97.7 1.0
C5 D:DC16 4.7 74.9 1.0
CB A:GLN215 4.7 90.7 1.0
CD A:GLN215 4.8 97.3 1.0
CA A:PRO214 4.8 86.9 1.0
CB A:GLU221 4.9 84.1 1.0
N1 D:DC16 4.9 78.6 1.0
N7 C:DG4 4.9 76.2 1.0

Reference:

S.Hare, S.S.Gupta, E.Valkov, A.Engelman, P.Cherepanov. Retroviral Intasome Assembly and Inhibition of Dna Strand Transfer Nature V. 464 232 2010.
ISSN: ISSN 0028-0836
PubMed: 20118915
DOI: 10.1038/NATURE08784
Page generated: Fri Jul 11 07:16:25 2025

Last articles

Cl in 3VKO
Cl in 3VKN
Cl in 3VKB
Cl in 3VKK
Cl in 3VK1
Cl in 3VIP
Cl in 3VIV
Cl in 3VIN
Cl in 3VIO
Cl in 3VH9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy