Chlorine in PDB 3l2w: Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir)

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir), PDB code: 3l2w was solved by S.Hare, S.S.Gupta, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.90 / 3.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	157.880, 157.880, 125.090, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 22

The structure of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Manganese	(Mn)	3 atoms
Zinc	(Zn)	1 atom

The binding sites of Chlorine atom in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) (pdb code 3l2w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir), PDB code: 3l2w:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex with Manganese and GS9137 (Elvitegravir) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl397 b:91.5 occ:1.00 CLAI A:ELV397 0.0 91.5 1.0 CAT A:ELV397 1.7 83.6 1.0 CAK A:ELV397 2.4 84.3 1.0 CAU A:ELV397 2.8 80.5 1.0 N1 C:DG4 3.1 82.2 1.0 FAH A:ELV397 3.3 75.3 1.0 C2 C:DG4 3.4 81.8 1.0 C6 C:DG4 3.5 82.1 1.0 N3 D:DC16 3.7 79.8 1.0 N A:GLN215 3.7 92.3 1.0 CAJ A:ELV397 3.8 85.0 1.0 N2 C:DG4 3.8 83.8 1.0 CA A:GLN215 3.8 92.9 1.0 N3 C:DG4 3.9 81.8 1.0 C A:PRO214 3.9 91.2 1.0 O6 C:DG4 3.9 82.5 1.0 C5 C:DG4 3.9 81.7 1.0 CAV A:ELV397 4.0 78.9 1.0 C4 D:DC16 4.0 79.8 1.0 C4 C:DG4 4.1 81.8 1.0 CG A:GLN215 4.1 97.0 1.0 CB A:PRO214 4.1 89.7 1.0 O A:PRO214 4.1 90.6 1.0 OE1 A:GLN215 4.1 0.2 1.0 N4 D:DC16 4.2 79.1 1.0 C2 D:DC16 4.2 82.5 1.0 CAL A:ELV397 4.3 82.2 1.0 CD A:GLN215 4.5 0.3 1.0 CB A:GLN215 4.5 94.5 1.0 O2 D:DC16 4.5 81.6 1.0 CA A:PRO214 4.6 91.1 1.0 C5 D:DC16 4.8 82.4 1.0 N7 C:DG4 4.9 82.3 1.0 CB A:GLU221 4.9 86.5 1.0 CG A:PRO214 5.0 90.7 1.0 N1 D:DC16 5.0 84.1 1.0

S.Hare, S.S.Gupta, E.Valkov, A.Engelman, P.Cherepanov. Retroviral Intasome Assembly and Inhibition of Dna Strand Transfer Nature V. 464 232 2010.
ISSN: ISSN 0028-0836
PubMed: 20118915
DOI: 10.1038/NATURE08784