Chlorine in PDB 3l5o: Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution

The structure of Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution, PDB code: 3l5o was solved by Joint Center For Structural Genomics, Joint Center For Structuralgenomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.98 / 2.01
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	120.640, 120.640, 75.200, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 21.5

The binding sites of Chlorine atom in the Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution (pdb code 3l5o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution, PDB code: 3l5o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:39.8 occ:1.00 O A:HOH445 3.1 54.0 1.0 O A:HOH372 3.1 42.7 1.0 N1 A:IMD303 3.3 68.0 1.0 N A:TRP149 3.3 47.4 1.0 CA A:GLU148 3.6 43.4 1.0 CB A:GLU148 3.7 44.1 1.0 C5 A:IMD303 3.8 64.7 1.0 CA A:GLY129 3.9 42.2 1.0 C A:GLU148 4.0 44.6 1.0 CD1 A:TRP149 4.1 65.3 1.0 CG A:GLU148 4.2 48.8 1.0 CB A:TRP149 4.3 53.2 1.0 CA A:TRP149 4.4 48.0 1.0 O A:HOH424 4.4 49.5 1.0 N A:HIS130 4.4 46.5 1.0 C2 A:IMD303 4.4 63.5 1.0 C A:GLY129 4.5 43.2 1.0 N A:GLY129 4.5 41.7 1.0 CG A:TRP149 4.5 55.0 1.0 O A:HOH536 4.8 65.3 1.0 O A:LEU147 4.8 39.7 1.0 N A:GLU148 4.9 42.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Protein with Unknown Function From DUF364 Family (ZP_00559375.1) From Desulfitobacterium Hafniense Dcb-2 at 2.01 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:45.9 occ:1.00 O B:HOH477 3.0 55.8 1.0 O2 B:EDO310 3.1 62.8 1.0 N B:TRP149 3.1 57.0 1.0 N1 B:IMD302 3.5 69.0 1.0 O B:HOH457 3.6 54.1 1.0 CA B:GLU148 3.6 50.1 1.0 CB B:TRP149 3.8 68.4 1.0 CB B:GLU148 3.8 50.7 1.0 CA B:GLY129 3.8 45.8 1.0 C B:GLU148 3.9 52.4 1.0 CA B:TRP149 4.0 61.6 1.0 C5 B:IMD302 4.2 63.6 1.0 O B:HOH535 4.3 65.1 1.0 N B:GLY129 4.4 44.9 1.0 C2 B:IMD302 4.5 57.9 1.0 C2 B:EDO310 4.5 72.1 1.0 C B:GLY129 4.5 44.8 1.0 N B:HIS130 4.6 45.1 1.0 CD2 B:LEU158 4.7 50.5 1.0 O B:LEU147 4.8 44.5 1.0 CD1 B:LEU158 4.9 56.6 1.0 O1 B:EDO310 4.9 62.3 1.0 N B:GLU148 5.0 44.5 1.0

M.D.Miller, L.Aravind, C.Bakolitsa, C.L.Rife, D.Carlton, P.Abdubek, T.Astakhova, H.L.Axelrod, H.J.Chiu, T.Clayton, M.C.Deller, L.Duan, J.Feuerhelm, J.C.Grant, G.W.Han, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, A.Kumar, D.Marciano, D.Mcmullan, A.T.Morse, E.Nigoghossian, L.Okach, R.Reyes, H.Van Den Bedem, D.Weekes, Q.Xu, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Structure of the First Representative of Pfam Family PF04016 (DUF364) Reveals Enolase and Rossmann-Like Folds That Combine to Form A Unique Active Site with A Possible Role in Heavy-Metal Chelation. Acta Crystallogr.,Sect.F V. 66 1167 2010.
ISSN: ESSN 1744-3091
PubMed: 20944207
DOI: 10.1107/S1744309110007517