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Chlorine in PDB 3ldv: 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961

Enzymatic activity of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961

All present enzymatic activity of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961:
4.1.1.23;

Protein crystallography data

The structure of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3ldv was solved by A.S.Halavaty, L.Shuvalova, G.Minasov, I.Dubrovska, J.Winsor, E.M.Glass, S.N.Peterson, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.300, 94.675, 99.183, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 18.5

Other elements in 3ldv:

The structure of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 (pdb code 3ldv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3ldv:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3ldv

Go back to Chlorine Binding Sites List in 3ldv
Chlorine binding site 1 out of 4 in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl233

b:35.5
occ:1.00
 N A:ASN68 3.2 22.3 1.0
CD A:PRO67 3.6 20.9 1.0
CB A:ASN68 3.7 25.6 1.0
N A:PRO67 3.7 20.1 1.0
CB A:ILE66 3.9 21.2 1.0
CG1 A:ILE66 4.0 22.1 1.0
CD1 A:ILE66 4.0 23.1 1.0
CB A:PRO67 4.0 22.2 1.0
CA A:ASN68 4.0 23.5 1.0
C A:PRO67 4.1 21.4 1.0
CA A:PRO67 4.2 21.4 1.0
CG A:PRO67 4.2 21.8 1.0
C A:ILE66 4.2 19.8 1.0
CA A:ILE66 4.6 20.1 1.0
O A:HOH365 4.8 23.2 1.0
O A:HOH317 4.8 44.5 1.0
O A:ILE66 4.9 18.4 1.0
CG2 A:ILE66 5.0 22.1 1.0

Chlorine binding site 2 out of 4 in 3ldv

Go back to Chlorine Binding Sites List in 3ldv
Chlorine binding site 2 out of 4 in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl234

b:50.0
occ:1.00
 OG1 A:THR29 3.0 31.3 1.0
N A:ASP26 3.1 26.9 1.0
CG A:GLU220 3.5 43.2 0.5
CA A:ILE25 3.5 27.0 1.0
CB A:ILE25 3.7 26.5 1.0
C A:ILE25 3.8 27.6 1.0
CB A:GLU220 3.8 40.4 0.5
CA A:GLU220 3.8 37.4 0.5
CA A:GLU220 3.8 36.7 0.5
CB A:GLU220 3.8 39.4 0.5
CG A:ASP26 3.9 34.0 1.0
CB A:ASP26 3.9 29.5 1.0
OD2 A:ASP26 3.9 39.8 1.0
CD1 A:LEU223 3.9 31.4 1.0
CB A:THR29 4.0 28.2 1.0
CG2 A:ILE25 4.0 27.2 1.0
CA A:ASP26 4.0 28.6 1.0
CG2 A:THR29 4.1 30.4 1.0
O A:HOH487 4.3 21.5 1.0
O A:ASP26 4.3 27.7 1.0
O A:GLU220 4.4 36.3 0.5
OD1 A:ASP26 4.4 38.5 1.0
O A:GLU220 4.4 36.6 0.5
CD A:GLU220 4.4 48.6 0.5
CB A:LEU223 4.6 31.7 1.0
O A:LYS24 4.6 28.6 1.0
C A:GLU220 4.6 37.5 0.5
C A:GLU220 4.6 37.8 0.5
C A:ASP26 4.7 27.2 1.0
N A:ILE25 4.8 26.8 1.0
N A:GLU220 4.8 36.7 0.5
N A:GLU220 4.9 36.4 0.5
OE2 A:GLU220 4.9 52.7 0.5
CG A:LEU223 4.9 31.5 1.0
O A:ILE25 4.9 28.2 1.0

Chlorine binding site 3 out of 4 in 3ldv

Go back to Chlorine Binding Sites List in 3ldv
Chlorine binding site 3 out of 4 in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl232

b:37.9
occ:1.00
 N B:ASN68 3.2 24.5 1.0
CB B:ASN68 3.6 27.1 1.0
CD B:PRO67 3.6 23.4 1.0
O B:HOH567 3.6 37.0 1.0
N B:PRO67 3.7 23.1 1.0
CD1 B:ILE66 4.0 24.9 1.0
CB B:PRO67 4.0 24.4 1.0
CB B:ILE66 4.0 22.4 1.0
CA B:ASN68 4.0 25.6 1.0
CG1 B:ILE66 4.0 25.0 1.0
C B:PRO67 4.1 23.5 1.0
CA B:PRO67 4.1 23.3 1.0
C B:ILE66 4.2 21.4 1.0
CG B:PRO67 4.2 23.6 1.0
CA B:ILE66 4.6 21.6 1.0
CB A:SER121 4.7 37.1 1.0
O B:HOH419 4.9 23.7 1.0
O B:ILE66 4.9 21.7 1.0
CG B:ASN68 4.9 32.6 1.0
O A:HOH298 4.9 28.1 1.0

Chlorine binding site 4 out of 4 in 3ldv

Go back to Chlorine Binding Sites List in 3ldv
Chlorine binding site 4 out of 4 in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl233

b:46.4
occ:0.70
 NE2 B:GLN128 1.7 40.6 0.3
CD B:GLN128 1.9 39.0 0.3
OE1 B:GLN128 2.2 39.2 0.3
O B:HOH328 3.0 11.1 0.5
CG B:GLN128 3.1 37.6 0.3
CG B:GLN128 3.3 38.6 0.7
O B:HOH246 3.4 8.2 0.3
CB B:GLN128 4.1 34.7 0.7
CB B:GLN128 4.1 34.7 0.3
O B:HOH237 4.2 35.7 1.0
O B:HOH462 4.3 41.5 1.0
CD B:GLN128 4.4 39.9 0.7
CG B:LEU133 4.6 41.7 1.0
OE1 B:GLN128 4.7 41.3 0.7
CD2 B:LEU133 4.9 44.6 1.0

Reference:

A.S.Halavaty, L.Shuvalova, G.Minasov, I.Dubrovska, J.Winsor, E.M.Glass, S.N.Peterson, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 To Be Published.
Page generated: Sat Dec 12 09:53:00 2020

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