Chlorine in PDB 3llx: Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution, PDB code: 3llx
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.50
|
Space group
|
I 4 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
109.557,
109.557,
173.321,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
14.1 /
15.8
|
Other elements in 3llx:
The structure of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
(pdb code 3llx). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution, PDB code: 3llx:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 1 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl377
b:16.6
occ:1.00
|
O
|
A:HOH581
|
3.1
|
8.6
|
1.0
|
NE2
|
A:HIS338
|
3.1
|
10.4
|
1.0
|
O
|
A:HOH744
|
3.2
|
19.9
|
1.0
|
CG
|
A:LYS302
|
3.6
|
8.0
|
1.0
|
CE1
|
A:HIS338
|
3.8
|
10.9
|
1.0
|
CD
|
A:LYS302
|
4.0
|
9.0
|
1.0
|
CE1
|
A:PHE334
|
4.1
|
12.0
|
1.0
|
CB
|
A:LYS302
|
4.1
|
7.1
|
1.0
|
CD1
|
A:LEU308
|
4.1
|
8.5
|
1.0
|
CD2
|
A:LEU340
|
4.1
|
6.5
|
1.0
|
CD2
|
A:HIS338
|
4.3
|
9.9
|
1.0
|
CE
|
A:LYS302
|
4.3
|
10.5
|
1.0
|
CA
|
A:LYS302
|
4.3
|
6.1
|
1.0
|
CD2
|
A:LEU308
|
4.5
|
9.0
|
1.0
|
CD1
|
A:PHE334
|
4.6
|
10.9
|
1.0
|
CG
|
A:LEU308
|
4.8
|
6.7
|
1.0
|
CZ
|
A:PHE334
|
4.9
|
11.2
|
1.0
|
O
|
A:HOH497
|
4.9
|
39.6
|
1.0
|
O
|
A:HOH717
|
5.0
|
18.3
|
1.0
|
O
|
A:HOH858
|
5.0
|
27.4
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 2 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl378
b:21.1
occ:1.00
|
OG1
|
A:THR180
|
3.2
|
12.3
|
1.0
|
N
|
A:ASN179
|
3.3
|
12.5
|
1.0
|
N
|
A:THR180
|
3.5
|
12.1
|
1.0
|
CA
|
A:CYS178
|
3.7
|
11.9
|
1.0
|
CA
|
A:GLY183
|
3.7
|
8.7
|
1.0
|
CB
|
A:CYS178
|
3.7
|
12.1
|
1.0
|
OD1
|
A:ASN179
|
3.9
|
16.8
|
1.0
|
C
|
A:CYS178
|
4.0
|
12.3
|
1.0
|
CB
|
A:THR180
|
4.0
|
13.7
|
1.0
|
CG2
|
A:THR180
|
4.1
|
14.8
|
1.0
|
CA
|
A:THR180
|
4.2
|
13.0
|
1.0
|
O
|
A:THR180
|
4.2
|
11.1
|
1.0
|
SG
|
A:CYS178
|
4.3
|
16.2
|
1.0
|
C
|
A:ASN179
|
4.3
|
13.2
|
1.0
|
CA
|
A:ASN179
|
4.3
|
13.1
|
1.0
|
N
|
A:GLY183
|
4.4
|
9.8
|
1.0
|
C
|
A:GLY183
|
4.4
|
9.9
|
1.0
|
O
|
A:HOH872
|
4.5
|
28.5
|
1.0
|
C
|
A:THR180
|
4.7
|
11.8
|
1.0
|
CG
|
A:ASN179
|
4.7
|
18.2
|
1.0
|
N
|
A:LEU184
|
4.8
|
8.5
|
1.0
|
O
|
A:HOH554
|
4.9
|
49.1
|
1.0
|
N
|
A:CYS178
|
5.0
|
11.6
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 3 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl379
b:14.2
occ:1.00
|
O
|
A:HOH756
|
3.1
|
20.8
|
1.0
|
N
|
A:TRS383
|
3.5
|
16.6
|
0.4
|
C3
|
A:TRS383
|
3.7
|
17.1
|
0.4
|
C1
|
A:TRS383
|
3.7
|
17.6
|
0.4
|
C1
|
A:TRS383
|
3.7
|
10.0
|
0.6
|
CE1
|
A:HIS346
|
3.8
|
7.3
|
1.0
|
N
|
A:TRS383
|
3.8
|
5.9
|
0.6
|
C
|
A:TRS383
|
3.8
|
17.1
|
0.4
|
C3
|
A:TRS383
|
3.9
|
10.0
|
0.6
|
O1
|
A:TRS383
|
3.9
|
16.3
|
0.4
|
C
|
A:TRS383
|
4.0
|
9.0
|
0.6
|
O1
|
A:TRS383
|
4.2
|
5.7
|
0.6
|
ND1
|
A:HIS346
|
4.6
|
7.6
|
1.0
|
NE2
|
A:HIS346
|
4.7
|
8.0
|
1.0
|
O
|
A:HOH522
|
4.8
|
42.0
|
1.0
|
O3
|
A:TRS383
|
4.8
|
15.9
|
0.4
|
O
|
A:HOH663
|
4.9
|
14.5
|
1.0
|
O3
|
A:TRS383
|
4.9
|
9.4
|
0.6
|
|
Chlorine binding site 4 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 4 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl380
b:22.8
occ:1.00
|
O
|
A:HOH849
|
2.9
|
27.1
|
1.0
|
N
|
A:ILE115
|
3.2
|
7.5
|
1.0
|
NZ
|
A:LYS153
|
3.2
|
19.6
|
1.0
|
CB
|
A:ASN114
|
3.5
|
6.7
|
0.5
|
OD1
|
A:ASN114
|
3.6
|
10.6
|
0.5
|
CA
|
A:ASN114
|
3.6
|
6.2
|
0.5
|
CD
|
A:LYS153
|
3.6
|
17.0
|
1.0
|
CA
|
A:ASN114
|
3.7
|
6.6
|
0.5
|
CG
|
A:ASN114
|
3.7
|
7.6
|
0.5
|
CE
|
A:LYS153
|
3.7
|
18.9
|
1.0
|
CG2
|
A:ILE115
|
3.7
|
10.3
|
1.0
|
C
|
A:ASN114
|
3.9
|
6.9
|
0.5
|
C
|
A:ASN114
|
3.9
|
6.7
|
0.5
|
CB
|
A:ILE115
|
4.0
|
10.0
|
1.0
|
ND2
|
A:ASN114
|
4.1
|
8.1
|
0.5
|
CA
|
A:ILE115
|
4.2
|
8.5
|
1.0
|
CB
|
A:ASN114
|
4.2
|
7.3
|
0.5
|
CD1
|
A:ILE157
|
4.3
|
9.8
|
1.0
|
O
|
A:ASP113
|
4.5
|
6.6
|
1.0
|
CG
|
A:LYS153
|
4.7
|
14.3
|
1.0
|
N
|
A:ASN114
|
4.8
|
5.8
|
0.5
|
O
|
A:HOH896
|
4.8
|
30.2
|
1.0
|
N
|
A:ASN114
|
4.8
|
5.5
|
0.5
|
O
|
A:HOH710
|
4.9
|
17.8
|
1.0
|
CG
|
A:ASN114
|
4.9
|
8.1
|
0.5
|
|
Chlorine binding site 5 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 5 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl381
b:45.6
occ:1.00
|
O
|
A:HOH807
|
2.6
|
23.6
|
1.0
|
NH1
|
A:ARG341
|
3.0
|
10.8
|
1.0
|
O
|
A:HOH475
|
3.1
|
37.6
|
1.0
|
O
|
A:ASP304
|
3.5
|
14.9
|
1.0
|
CD2
|
A:LEU360
|
3.7
|
13.1
|
1.0
|
CB
|
A:ALA4
|
3.9
|
25.6
|
1.0
|
CZ
|
A:ARG341
|
4.0
|
10.2
|
1.0
|
C
|
A:ASP304
|
4.0
|
12.2
|
1.0
|
NH2
|
A:ARG341
|
4.0
|
11.7
|
1.0
|
O
|
A:HOH437
|
4.2
|
34.9
|
1.0
|
CA
|
A:ALA4
|
4.3
|
24.2
|
1.0
|
O
|
A:ILE303
|
4.4
|
10.8
|
0.4
|
CA
|
A:ASP304
|
4.5
|
11.6
|
1.0
|
O
|
A:ILE303
|
4.6
|
13.4
|
0.6
|
OD2
|
A:ASP19
|
4.7
|
13.4
|
1.0
|
N
|
A:GLY305
|
4.7
|
10.8
|
1.0
|
CD1
|
A:ILE8
|
4.9
|
6.8
|
0.5
|
N
|
A:ALA4
|
4.9
|
29.0
|
1.0
|
CA
|
A:GLY305
|
5.0
|
10.7
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 3llx
Go back to
Chlorine Binding Sites List in 3llx
Chlorine binding site 6 out
of 6 in the Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of An Ala Racemase-Like Protein (IL1761) From Idiomarina Loihiensis at 1.50 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl382
b:37.1
occ:1.00
|
N
|
A:SER286
|
3.0
|
9.7
|
1.0
|
OG
|
A:SER286
|
3.5
|
15.7
|
1.0
|
CA
|
A:ASP285
|
3.6
|
8.6
|
1.0
|
C
|
A:ASP285
|
3.8
|
8.8
|
1.0
|
CA
|
A:SER286
|
3.9
|
9.7
|
1.0
|
O
|
A:ARG284
|
4.0
|
10.5
|
0.5
|
OD1
|
A:ASP285
|
4.0
|
10.9
|
1.0
|
CG
|
A:ASP285
|
4.0
|
9.2
|
1.0
|
C
|
A:SER286
|
4.1
|
12.2
|
1.0
|
N
|
A:GLY287
|
4.1
|
11.0
|
1.0
|
O
|
A:ARG284
|
4.2
|
7.7
|
0.5
|
CB
|
A:SER286
|
4.3
|
12.6
|
1.0
|
OD2
|
A:ASP285
|
4.3
|
11.0
|
1.0
|
CB
|
A:ASP285
|
4.4
|
8.6
|
1.0
|
N
|
A:ASP285
|
4.7
|
9.8
|
1.0
|
O
|
A:SER286
|
4.7
|
13.9
|
1.0
|
C
|
A:ARG284
|
4.7
|
9.7
|
0.5
|
C
|
A:ARG284
|
4.8
|
9.1
|
0.5
|
CA
|
A:GLY287
|
4.9
|
11.8
|
1.0
|
O
|
A:ASP285
|
5.0
|
9.3
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 23:30:45 2024
|