Atomistry » Chlorine » PDB 3lnr-3lya » 3lnz
Atomistry »
  Chlorine »
    PDB 3lnr-3lya »
      3lnz »

Chlorine in PDB 3lnz: Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)

Protein crystallography data

The structure of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant), PDB code: 3lnz was solved by M.Pazgier, W.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.95
Space group P 32 1 2
Cell size a, b, c (Å), α, β, γ (°) 90.544, 90.544, 196.837, 90.00, 90.00, 120.00
R / Rfree (%) 22 / 26.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) (pdb code 3lnz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant), PDB code: 3lnz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 1 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5

b:43.2
occ:1.00
 N A:GLN44 3.1 31.1 1.0
CA A:ALA43 3.8 28.9 1.0
CE A:LYS45 3.9 34.2 1.0
CA A:GLN44 3.9 33.1 1.0
OH A:TYR56 3.9 35.2 1.0
CG A:LYS45 3.9 34.8 1.0
C A:ALA43 3.9 30.1 1.0
CE1 A:TYR48 4.0 37.8 1.0
CB A:GLN44 4.0 34.0 1.0
C A:GLN44 4.2 32.8 1.0
N A:LYS45 4.2 31.6 1.0
CD A:LYS45 4.3 35.6 1.0
OH A:TYR48 4.3 37.7 1.0
CB A:ALA43 4.4 28.9 1.0
CB A:LYS45 4.5 32.5 1.0
CZ A:TYR56 4.6 28.9 1.0
CE2 A:TYR56 4.6 31.6 1.0
CZ A:TYR48 4.6 36.1 1.0
O A:GLY42 4.7 26.4 1.0
O A:GLN44 4.9 33.7 1.0
CG A:GLN44 5.0 36.0 1.0
CA A:LYS45 5.0 31.9 1.0
CD1 A:TYR48 5.0 35.3 1.0

Chlorine binding site 2 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 2 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl8

b:39.8
occ:1.00
 N C:GLN44 3.1 32.1 1.0
CE C:LYS45 3.4 34.5 1.0
OH C:TYR56 3.5 34.7 1.0
CE2 C:TYR56 3.9 29.8 1.0
CA C:ALA43 3.9 30.2 1.0
CB C:GLN44 3.9 33.3 1.0
NZ C:LYS45 3.9 35.8 1.0
C C:ALA43 3.9 31.2 1.0
CA C:GLN44 4.0 32.9 1.0
CE1 C:TYR48 4.0 29.3 1.0
CZ C:TYR56 4.1 29.4 1.0
N C:LYS45 4.1 32.4 1.0
CG C:GLN44 4.2 34.5 1.0
CB C:ALA43 4.4 29.1 1.0
C C:GLN44 4.6 32.9 1.0
OH C:TYR48 4.6 24.7 1.0
O C:GLY42 4.7 28.7 1.0
CB C:LYS45 4.7 31.6 1.0
CD C:LYS45 4.7 33.2 1.0
CZ C:TYR48 4.8 27.4 1.0
CG C:LYS45 4.8 32.4 1.0
CD1 C:TYR48 4.9 28.8 1.0

Chlorine binding site 3 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 3 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl2

b:30.6
occ:1.00
 O E:HOH303 2.8 28.4 1.0
O H:HOH469 3.1 27.6 1.0
N E:GLN44 3.1 23.2 1.0
O E:HOH175 3.4 28.2 1.0
CE E:LYS45 3.7 26.6 1.0
CA E:ALA43 3.8 22.6 1.0
CE1 E:TYR48 3.9 25.1 1.0
C E:ALA43 3.9 23.6 1.0
CG E:LYS45 3.9 28.3 1.0
CA E:GLN44 4.0 24.8 1.0
N E:LYS45 4.0 23.8 1.0
CE2 E:TYR56 4.0 28.6 1.0
CB E:GLN44 4.1 26.4 1.0
OH E:TYR48 4.2 27.4 1.0
CD E:LYS45 4.3 23.6 1.0
CB E:ALA43 4.3 22.3 1.0
C E:GLN44 4.4 23.6 1.0
CB E:LYS45 4.4 22.9 1.0
N H:THR1 4.5 28.6 1.0
OH E:TYR56 4.5 30.9 1.0
CZ E:TYR48 4.5 26.4 1.0
CZ E:TYR56 4.7 30.3 1.0
O E:GLY42 4.8 20.9 1.0
CD1 E:TYR48 4.8 25.0 1.0
CA E:LYS45 4.9 24.5 1.0
NZ E:LYS45 4.9 27.3 1.0
O H:HOH30 4.9 18.9 1.0
CD2 E:TYR56 4.9 27.6 1.0
N E:ALA43 5.0 21.4 1.0

Chlorine binding site 4 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 4 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl4

b:45.1
occ:1.00
 O F:HOH321 3.1 29.8 1.0
N G:GLN44 3.2 29.1 1.0
OH G:TYR56 3.7 36.4 1.0
CE G:LYS45 3.7 33.3 1.0
O F:HOH631 3.8 28.9 1.0
CE1 G:TYR48 3.8 25.5 1.0
CB G:GLN44 3.9 29.7 1.0
CA G:ALA43 3.9 30.0 1.0
N G:LYS45 3.9 29.8 1.0
CA G:GLN44 4.0 29.5 1.0
CE2 G:TYR56 4.0 34.9 1.0
CG G:LYS45 4.1 32.8 1.0
C G:ALA43 4.1 29.3 1.0
CB G:LYS45 4.2 30.2 1.0
O G:HOH269 4.2 40.9 1.0
CZ G:TYR56 4.2 34.6 1.0
CB G:ALA43 4.3 29.7 1.0
C G:GLN44 4.4 29.7 1.0
OH G:TYR48 4.4 31.1 1.0
CD G:LYS45 4.5 35.2 1.0
NZ G:LYS45 4.5 33.0 1.0
CZ G:TYR48 4.6 27.5 1.0
N F:THR1 4.7 37.1 1.0
CG G:GLN44 4.7 31.2 1.0
CA G:LYS45 4.7 30.2 1.0
CD1 G:TYR48 4.7 27.6 1.0
O G:GLY42 4.7 29.4 1.0

Chlorine binding site 5 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 5 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl1

b:32.7
occ:1.00
 O I:HOH437 3.1 23.5 1.0
N I:GLN44 3.3 21.9 1.0
CE2 I:TYR56 3.8 25.0 1.0
CE1 I:TYR48 3.9 26.0 1.0
CE I:LYS45 3.9 24.3 1.0
CA I:ALA43 4.0 20.7 1.0
CG I:LYS45 4.0 26.8 1.0
CA I:GLN44 4.1 25.4 1.0
N I:LYS45 4.1 25.8 1.0
CB I:GLN44 4.1 25.9 1.0
C I:ALA43 4.1 21.4 1.0
CB I:LYS45 4.2 25.7 1.0
OH I:TYR56 4.3 31.7 1.0
C I:GLN44 4.4 25.8 1.0
OH I:TYR48 4.4 18.8 1.0
CZ I:TYR56 4.4 24.6 1.0
CD I:LYS45 4.5 24.8 1.0
CB I:ALA43 4.5 19.8 1.0
CZ I:TYR48 4.6 26.3 1.0
CD2 I:TYR56 4.7 23.5 1.0
CD1 I:TYR48 4.8 29.1 1.0
CA I:LYS45 4.9 26.5 1.0
O I:GLY42 5.0 22.2 1.0

Chlorine binding site 6 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 6 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl7

b:48.7
occ:1.00
 N K:GLN44 3.1 35.2 1.0
CA K:ALA43 3.7 34.3 1.0
CB K:GLN44 3.8 35.1 1.0
C K:ALA43 3.8 34.6 1.0
OH K:TYR56 3.9 36.7 1.0
CE K:LYS45 3.9 35.8 1.0
CA K:GLN44 4.0 34.8 1.0
N K:LYS45 4.0 33.4 1.0
CE1 K:TYR48 4.0 30.3 1.0
CG K:LYS45 4.2 35.4 1.0
O K:HOH672 4.3 25.1 1.0
CB K:ALA43 4.3 33.1 1.0
CE2 K:TYR56 4.3 34.5 1.0
CZ K:TYR56 4.4 34.3 1.0
CG K:GLN44 4.5 35.0 1.0
C K:GLN44 4.5 34.4 1.0
O K:GLY42 4.5 32.6 1.0
OH K:TYR48 4.6 33.2 1.0
CD K:LYS45 4.6 36.7 1.0
CD K:GLN44 4.7 36.1 1.0
CB K:LYS45 4.7 33.7 1.0
CZ K:TYR48 4.7 29.9 1.0
N K:ALA43 4.8 33.7 1.0
CD1 K:TYR48 4.9 26.6 1.0
NE2 K:GLN44 4.9 36.9 1.0

Chlorine binding site 7 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 7 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl3

b:33.9
occ:1.00
 CD M:PRO32 3.2 24.5 1.0
O M:HOH112 3.3 23.1 1.0
CG M:LEU33 3.5 24.7 1.0
N M:LEU33 3.5 24.3 1.0
N M:PRO32 3.6 22.5 1.0
CD1 M:LEU33 3.9 32.3 1.0
CB M:LEU33 3.9 26.1 1.0
CB M:LYS31 4.0 20.7 1.0
CE O:LYS36 4.1 25.1 1.0
CG M:PRO32 4.2 23.1 1.0
C M:LYS31 4.2 22.7 1.0
CB M:PRO32 4.3 22.4 1.0
CA M:PRO32 4.3 22.9 1.0
CA M:LEU33 4.4 25.0 1.0
C M:PRO32 4.4 23.2 1.0
CD O:LYS36 4.6 24.0 1.0
CA M:LYS31 4.7 22.6 1.0
CD2 M:LEU33 4.7 29.3 1.0
OD1 M:ASN106 4.7 29.4 1.0
O O:HOH696 4.9 33.1 1.0
O M:HOH205 5.0 39.6 1.0
O M:LYS31 5.0 22.0 1.0

Chlorine binding site 8 out of 8 in 3lnz

Go back to Chlorine Binding Sites List in 3lnz
Chlorine binding site 8 out of 8 in the Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Human MDM2 with A 12-Mer Peptide Inhibitor Pmi (N8A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl6

b:42.5
occ:1.00
 O M:HOH438 2.6 25.8 1.0
O M:HOH190 3.0 44.8 1.0
N M:GLN44 3.2 30.8 1.0
OH M:TYR48 3.4 44.0 1.0
CE1 M:TYR48 3.5 39.9 1.0
OH M:TYR56 3.7 32.5 1.0
CZ M:TYR48 3.9 41.5 1.0
CE M:LYS45 4.0 29.8 1.0
CA M:ALA43 4.0 30.0 1.0
CA M:GLN44 4.1 33.2 1.0
C M:ALA43 4.1 31.0 1.0
CB M:GLN44 4.1 32.4 1.0
CE2 M:TYR56 4.3 29.9 1.0
C M:GLN44 4.4 32.3 1.0
CG M:LYS45 4.4 32.2 1.0
CZ M:TYR56 4.4 28.4 1.0
CB M:ALA43 4.4 27.2 1.0
N M:LYS45 4.4 31.7 1.0
CD M:LYS45 4.6 33.3 1.0
CD1 M:TYR48 4.7 36.2 1.0
CB M:LYS45 4.7 30.8 1.0
NZ M:LYS45 4.8 32.6 1.0
O M:GLY42 4.8 29.2 1.0
CG M:GLN44 4.9 34.7 1.0

Reference:

C.Li, M.Pazgier, C.Li, W.Yuan, M.Liu, G.Wei, W.Y.Lu, W.Lu. Systematic Mutational Analysis of Peptide Inhibition of the P53-MDM2/Mdmx Interactions. J.Mol.Biol. V. 398 200 2010.
ISSN: ISSN 0022-2836
PubMed: 20226197
DOI: 10.1016/J.JMB.2010.03.005
Page generated: Sat Jul 20 23:33:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy