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Chlorine in PDB 3lp9: Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus

Protein crystallography data

The structure of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus, PDB code: 3lp9 was solved by V.Gaur, I.A.Qureshi, A.Singh, V.Chanana, D.M.Salunke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.63 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.170, 88.140, 154.530, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / 26.6

Other elements in 3lp9:

The structure of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus (pdb code 3lp9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus, PDB code: 3lp9:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3lp9

Go back to Chlorine Binding Sites List in 3lp9
Chlorine binding site 1 out of 4 in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl314

b:18.4
occ:1.00
 O A:ALA177 2.9 15.7 1.0
O A:ALA9 3.1 15.8 1.0
O A:SER67 3.2 17.0 1.0
O A:ALA123 3.3 15.3 1.0
N A:ALA9 3.3 15.2 1.0
N A:ALA177 3.4 15.6 1.0
N A:ALA123 3.7 15.3 1.0
O A:HOH242 3.7 15.8 1.0
N A:SER67 3.8 14.5 1.0
C A:ALA177 3.8 15.1 1.0
C A:ALA9 4.0 15.7 1.0
OG A:SER67 4.0 15.3 1.0
C A:SER67 4.0 15.8 1.0
CA A:ALA8 4.1 14.7 1.0
CA A:ALA9 4.1 15.2 1.0
C A:ALA8 4.1 15.4 1.0
CA A:ALA177 4.1 15.4 1.0
C A:ALA123 4.2 15.2 1.0
CA A:ALA122 4.2 14.8 1.0
CA A:ALA176 4.4 15.4 1.0
CA A:SER67 4.4 15.4 1.0
C A:ALA176 4.4 15.8 1.0
CA A:ALA123 4.4 14.8 1.0
C A:ALA122 4.4 15.3 1.0
CB A:ALA176 4.5 14.7 1.0
CB A:ALA9 4.6 15.0 1.0
SG A:CYS66 4.6 16.1 1.0
CB A:ALA8 4.6 14.6 1.0
CB A:ALA122 4.6 15.4 1.0
CA A:CYS66 4.7 14.9 1.0
C A:CYS66 4.7 15.1 1.0
CB A:ALA177 4.7 14.9 1.0
CB A:ALA123 4.7 14.5 1.0
CB A:SER67 4.8 15.2 1.0

Chlorine binding site 2 out of 4 in 3lp9

Go back to Chlorine Binding Sites List in 3lp9
Chlorine binding site 2 out of 4 in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl315

b:18.5
occ:1.00
 O B:SER67 3.0 15.9 1.0
O B:ALA177 3.1 17.4 1.0
O B:ALA9 3.3 15.4 1.0
O B:ALA123 3.3 16.4 1.0
N B:ALA9 3.5 15.4 1.0
N B:ALA123 3.5 16.1 1.0
N B:ALA177 3.5 16.6 1.0
N B:SER67 3.6 16.0 1.0
CA B:ALA122 3.9 15.3 1.0
O B:HOH321 3.9 16.3 1.0
C B:SER67 4.0 16.1 1.0
CA B:ALA8 4.0 15.1 1.0
C B:ALA177 4.0 16.1 1.0
OG B:SER67 4.1 15.0 1.0
C B:ALA122 4.2 15.5 1.0
C B:ALA9 4.2 16.1 1.0
CA B:ALA176 4.2 15.9 1.0
C B:ALA8 4.2 15.1 1.0
CB B:ALA122 4.3 15.5 1.0
C B:ALA123 4.3 16.1 1.0
CA B:SER67 4.3 15.7 1.0
CA B:ALA177 4.3 16.1 1.0
C B:ALA176 4.3 16.1 1.0
CB B:ALA8 4.4 14.2 1.0
CA B:ALA9 4.4 15.1 1.0
CB B:ALA176 4.4 15.6 1.0
CA B:ALA123 4.4 16.1 1.0
CA B:CYS66 4.4 15.1 1.0
SG B:CYS66 4.5 16.2 1.0
C B:CYS66 4.5 14.9 1.0
CB B:ALA123 4.8 15.4 1.0
CB B:ALA177 4.8 16.0 1.0
CB B:SER67 4.8 15.5 1.0
CB B:ALA9 4.9 14.9 1.0
O B:ASP121 5.0 15.5 1.0

Chlorine binding site 3 out of 4 in 3lp9

Go back to Chlorine Binding Sites List in 3lp9
Chlorine binding site 3 out of 4 in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl316

b:19.1
occ:1.00
 O C:SER67 2.9 17.3 1.0
O C:ALA177 2.9 16.3 1.0
O C:ALA123 3.1 15.5 1.0
N C:ALA123 3.1 14.5 1.0
O C:ALA9 3.3 15.3 1.0
N C:ALA177 3.5 15.6 1.0
N C:ALA9 3.6 15.1 1.0
N C:SER67 3.7 16.0 1.0
CA C:ALA122 3.8 14.6 1.0
O C:HOH326 3.9 17.7 1.0
C C:ALA122 3.9 14.5 1.0
C C:ALA177 3.9 15.4 1.0
C C:SER67 3.9 17.4 1.0
C C:ALA123 3.9 14.5 1.0
CA C:ALA123 4.0 14.7 1.0
CB C:ALA122 4.1 14.2 1.0
CA C:ALA177 4.2 15.7 1.0
C C:ALA9 4.2 14.8 1.0
CA C:ALA8 4.3 15.2 1.0
OG C:SER67 4.3 17.0 1.0
C C:ALA176 4.3 15.9 1.0
CA C:SER67 4.3 16.5 1.0
CA C:ALA176 4.3 15.5 1.0
C C:ALA8 4.4 15.3 1.0
CA C:ALA9 4.4 14.8 1.0
SG C:CYS66 4.4 15.4 1.0
CB C:ALA123 4.6 14.6 1.0
CA C:CYS66 4.6 15.2 1.0
C C:CYS66 4.6 15.2 1.0
CB C:ALA8 4.6 14.7 1.0
CB C:ALA176 4.7 15.2 1.0
CB C:ALA177 4.7 15.1 1.0
CB C:ALA9 4.9 14.4 1.0
CB C:SER67 4.9 16.7 1.0

Chlorine binding site 4 out of 4 in 3lp9

Go back to Chlorine Binding Sites List in 3lp9
Chlorine binding site 4 out of 4 in the Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of LS24, A Seed Albumin From Lathyrus Sativus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl317

b:19.5
occ:1.00
 O D:ALA177 2.8 17.1 1.0
O D:SER67 3.0 17.1 1.0
O D:ALA123 3.1 15.3 1.0
N D:ALA123 3.2 15.3 1.0
N D:ALA177 3.3 16.3 1.0
O D:ALA9 3.3 15.9 1.0
N D:ALA9 3.5 15.1 1.0
O D:HOH455 3.7 16.3 1.0
C D:ALA177 3.7 16.0 1.0
CA D:ALA122 3.9 15.4 1.0
N D:SER67 3.9 15.8 1.0
CA D:ALA177 4.0 15.7 1.0
C D:ALA123 4.0 15.5 1.0
C D:ALA122 4.0 15.1 1.0
CA D:ALA123 4.1 15.1 1.0
C D:SER67 4.1 16.7 1.0
C D:ALA176 4.2 15.7 1.0
CA D:ALA176 4.2 15.6 1.0
C D:ALA9 4.2 15.0 1.0
CB D:ALA122 4.2 15.1 1.0
CA D:ALA8 4.3 15.0 1.0
OG D:SER67 4.3 16.7 1.0
CA D:ALA9 4.3 15.4 1.0
C D:ALA8 4.4 15.9 1.0
CB D:ALA177 4.4 15.9 1.0
CB D:ALA176 4.5 16.0 1.0
CB D:ALA123 4.5 14.6 1.0
SG D:CYS66 4.6 15.1 1.0
CA D:SER67 4.6 16.5 1.0
CA D:CYS66 4.7 15.6 1.0
CB D:ALA8 4.7 15.0 1.0
C D:CYS66 4.8 15.6 1.0
CB D:ALA9 4.9 14.9 1.0
N D:PHE178 4.9 15.9 1.0

Reference:

V.Gaur, I.A.Qureshi, A.Singh, V.Chanana, D.M.Salunke. Crystal Structure and Functional Insights of Hemopexin Fold Protein From Grass Pea Plant Physiol. V. 152 1842 2010.
ISSN: ISSN 0032-0889
PubMed: 20147493
DOI: 10.1104/PP.109.150680
Page generated: Sat Jul 20 23:35:42 2024

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