Chlorine in PDB 3lt4: Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
Enzymatic activity of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
All present enzymatic activity of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4:
1.3.1.9;
Protein crystallography data
The structure of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4, PDB code: 3lt4
was solved by
K.Maity,
S.P.Bhargav,
N.Surolia,
A.Surolia,
K.Suguna,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
51.41 /
2.25
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
131.180,
131.180,
82.780,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.3 /
20.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
(pdb code 3lt4). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4, PDB code: 3lt4:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3lt4
Go back to
Chlorine Binding Sites List in 3lt4
Chlorine binding site 1 out
of 4 in the Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:26.2
occ:1.00
|
CL14
|
A:FB4502
|
0.0
|
26.2
|
1.0
|
C4
|
A:FB4502
|
1.8
|
26.3
|
1.0
|
C3
|
A:FB4502
|
2.7
|
25.9
|
1.0
|
C5
|
A:FB4502
|
2.8
|
26.8
|
1.0
|
O7N
|
A:NAD501
|
3.5
|
25.8
|
1.0
|
CZ
|
A:TYR267
|
3.6
|
20.5
|
1.0
|
CE1
|
A:TYR267
|
3.6
|
18.3
|
1.0
|
CE2
|
A:PHE368
|
3.8
|
38.4
|
1.0
|
CE2
|
A:TYR267
|
3.9
|
19.4
|
1.0
|
C4N
|
A:NAD501
|
3.9
|
19.8
|
1.0
|
OH
|
A:TYR267
|
3.9
|
18.0
|
1.0
|
CD1
|
A:TYR267
|
4.0
|
18.0
|
1.0
|
C2
|
A:FB4502
|
4.0
|
26.7
|
1.0
|
CD1
|
A:ILE369
|
4.0
|
31.1
|
1.0
|
C6
|
A:FB4502
|
4.1
|
28.0
|
1.0
|
CZ
|
A:PHE368
|
4.1
|
40.6
|
1.0
|
C7N
|
A:NAD501
|
4.2
|
25.2
|
1.0
|
CD2
|
A:TYR267
|
4.2
|
17.3
|
1.0
|
CG
|
A:TYR267
|
4.3
|
17.8
|
1.0
|
C3N
|
A:NAD501
|
4.3
|
24.0
|
1.0
|
CA
|
A:PRO314
|
4.4
|
20.1
|
1.0
|
CB
|
A:PRO314
|
4.4
|
19.4
|
1.0
|
C1
|
A:FB4502
|
4.5
|
27.3
|
1.0
|
C5N
|
A:NAD501
|
4.8
|
20.5
|
1.0
|
CE1
|
A:TYR277
|
4.8
|
16.1
|
1.0
|
CD2
|
A:PHE368
|
5.0
|
38.3
|
1.0
|
CD1
|
A:ILE323
|
5.0
|
45.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3lt4
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Chlorine Binding Sites List in 3lt4
Chlorine binding site 2 out
of 4 in the Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:32.3
occ:1.00
|
CL15
|
A:FB4502
|
0.0
|
32.3
|
1.0
|
C11
|
A:FB4502
|
1.8
|
28.7
|
1.0
|
C10
|
A:FB4502
|
2.7
|
28.0
|
1.0
|
C12
|
A:FB4502
|
2.8
|
27.6
|
1.0
|
N
|
A:ALA219
|
3.3
|
24.2
|
1.0
|
O
|
A:HOH560
|
3.5
|
45.9
|
1.0
|
CB
|
A:ALA219
|
3.8
|
23.4
|
1.0
|
C
|
A:ASN218
|
3.8
|
23.7
|
1.0
|
O
|
A:ALA219
|
3.8
|
23.5
|
1.0
|
CB
|
A:VAL222
|
3.8
|
28.2
|
1.0
|
CA
|
A:ASN218
|
3.8
|
23.6
|
1.0
|
CG2
|
A:VAL222
|
3.9
|
26.9
|
1.0
|
CA
|
A:ALA219
|
4.0
|
24.3
|
1.0
|
C13
|
A:FB4502
|
4.0
|
27.4
|
1.0
|
C9
|
A:FB4502
|
4.0
|
27.4
|
1.0
|
O
|
A:HOH573
|
4.0
|
55.0
|
1.0
|
ND2
|
A:ASN218
|
4.1
|
20.8
|
1.0
|
CG
|
A:MET281
|
4.1
|
17.9
|
1.0
|
CG1
|
A:VAL222
|
4.1
|
28.0
|
1.0
|
SD
|
A:MET281
|
4.2
|
23.0
|
1.0
|
C
|
A:ALA219
|
4.4
|
24.4
|
1.0
|
N
|
A:ASN218
|
4.5
|
23.2
|
1.0
|
C8
|
A:FB4502
|
4.5
|
27.3
|
1.0
|
O
|
A:ASN218
|
4.6
|
23.4
|
1.0
|
C
|
A:ALA217
|
4.8
|
22.7
|
1.0
|
O
|
A:ALA217
|
4.8
|
22.9
|
1.0
|
CG
|
A:ASN218
|
5.0
|
25.8
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3lt4
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Chlorine Binding Sites List in 3lt4
Chlorine binding site 3 out
of 4 in the Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:24.8
occ:1.00
|
CL14
|
B:FB4602
|
0.0
|
24.8
|
1.0
|
C4
|
B:FB4602
|
1.8
|
27.4
|
1.0
|
C3
|
B:FB4602
|
2.8
|
26.6
|
1.0
|
C5
|
B:FB4602
|
2.8
|
25.2
|
1.0
|
O7N
|
B:NAD601
|
3.6
|
23.5
|
1.0
|
CZ
|
B:TYR267
|
3.7
|
18.6
|
1.0
|
CE1
|
B:TYR267
|
3.8
|
19.4
|
1.0
|
C4N
|
B:NAD601
|
3.8
|
20.3
|
1.0
|
CE2
|
B:PHE368
|
3.9
|
33.8
|
1.0
|
CD1
|
B:ILE369
|
3.9
|
25.8
|
1.0
|
CE2
|
B:TYR267
|
3.9
|
18.5
|
1.0
|
C2
|
B:FB4602
|
4.1
|
26.9
|
1.0
|
OH
|
B:TYR267
|
4.1
|
18.9
|
1.0
|
C6
|
B:FB4602
|
4.1
|
26.2
|
1.0
|
CD1
|
B:TYR267
|
4.1
|
18.3
|
1.0
|
C7N
|
B:NAD601
|
4.2
|
21.9
|
1.0
|
CD2
|
B:TYR267
|
4.2
|
16.7
|
1.0
|
CG
|
B:TYR267
|
4.3
|
17.1
|
1.0
|
C3N
|
B:NAD601
|
4.3
|
20.7
|
1.0
|
CZ
|
B:PHE368
|
4.3
|
31.7
|
1.0
|
CA
|
B:PRO314
|
4.4
|
19.7
|
1.0
|
CB
|
B:PRO314
|
4.5
|
19.9
|
1.0
|
C1
|
B:FB4602
|
4.6
|
26.5
|
1.0
|
C5N
|
B:NAD601
|
4.8
|
19.8
|
1.0
|
CE1
|
B:TYR277
|
4.9
|
14.0
|
1.0
|
CD2
|
B:PHE368
|
5.0
|
31.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3lt4
Go back to
Chlorine Binding Sites List in 3lt4
Chlorine binding site 4 out
of 4 in the Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) in Complex with Triclosan Variant PB4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:30.8
occ:1.00
|
CL15
|
B:FB4602
|
0.0
|
30.8
|
1.0
|
C11
|
B:FB4602
|
1.8
|
29.5
|
1.0
|
C12
|
B:FB4602
|
2.7
|
27.0
|
1.0
|
C10
|
B:FB4602
|
2.7
|
27.2
|
1.0
|
O
|
B:HOH526
|
3.2
|
40.0
|
1.0
|
N
|
B:ALA219
|
3.4
|
23.5
|
1.0
|
CA
|
B:ASN218
|
3.8
|
23.4
|
1.0
|
C
|
B:ASN218
|
3.8
|
23.2
|
1.0
|
O
|
B:ALA219
|
3.9
|
24.0
|
1.0
|
CB
|
B:VAL222
|
3.9
|
23.3
|
1.0
|
CB
|
B:ALA219
|
3.9
|
22.7
|
1.0
|
ND2
|
B:ASN218
|
4.0
|
31.1
|
1.0
|
C13
|
B:FB4602
|
4.0
|
26.3
|
1.0
|
C9
|
B:FB4602
|
4.0
|
28.2
|
1.0
|
CG1
|
B:VAL222
|
4.0
|
23.3
|
1.0
|
CG2
|
B:VAL222
|
4.1
|
22.7
|
1.0
|
CA
|
B:ALA219
|
4.1
|
23.6
|
1.0
|
CG
|
B:MET281
|
4.3
|
20.3
|
1.0
|
SD
|
B:MET281
|
4.4
|
25.2
|
1.0
|
N
|
B:ASN218
|
4.4
|
22.3
|
1.0
|
O
|
B:HOH498
|
4.4
|
40.9
|
1.0
|
C
|
B:ALA219
|
4.5
|
23.9
|
1.0
|
C8
|
B:FB4602
|
4.5
|
27.5
|
1.0
|
O
|
B:ASN218
|
4.7
|
22.6
|
1.0
|
C
|
B:ALA217
|
4.8
|
21.9
|
1.0
|
O
|
B:ALA217
|
4.8
|
22.4
|
1.0
|
CG
|
B:ASN218
|
4.9
|
28.2
|
1.0
|
CB
|
B:ASN218
|
4.9
|
24.0
|
1.0
|
|
Reference:
K.Maity,
S.P.Bhargav,
B.Sankaran,
N.Surolia,
A.Surolia,
K.Suguna.
X-Ray Crystallographic Analysis of the Complexes of Enoyl Acyl Carrier Protein Reductase of Plasmodium Falciparum with Triclosan Variants to Elucidate the Importance of Different Functional Groups in Enzyme Inhibition Iubmb Life V. 62 467 2010.
ISSN: ISSN 1521-6543
PubMed: 20503440
DOI: 10.1002/IUB.327
Page generated: Sat Jul 20 23:38:50 2024
|