Atomistry » Chlorine » PDB 3lnr-3lya » 3lub
Atomistry »
  Chlorine »
    PDB 3lnr-3lya »
      3lub »

Chlorine in PDB 3lub: Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution, PDB code: 3lub was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.03 / 2.11
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.906, 156.790, 170.161, 90.00, 95.29, 90.00
R / Rfree (%) 15.1 / 19.3

Other elements in 3lub:

The structure of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 12 atoms
Zinc (Zn) 24 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution (pdb code 3lub). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution, PDB code: 3lub:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 1 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl255

b:47.1
occ:1.00
ND2 A:ASN77 3.1 22.4 1.0
O A:HOH1008 3.4 32.1 1.0
N A:ARG206 3.4 23.8 1.0
CA A:PRO205 3.9 22.4 1.0
NH2 F:ARG129 3.9 29.0 1.0
CB A:ARG206 4.1 27.1 1.0
C A:PRO205 4.2 23.0 1.0
CZ2 A:TRP203 4.2 25.1 1.0
NE1 A:TRP203 4.2 22.9 1.0
CG A:ASN77 4.3 24.3 1.0
CA A:ARG206 4.4 25.5 1.0
CE2 A:TRP203 4.5 24.7 1.0
CB A:PRO205 4.5 22.0 1.0
OD1 A:ASN77 4.6 28.0 1.0
O F:HOH1076 4.6 30.9 1.0
O A:VAL204 4.6 21.8 1.0
O A:HOH1966 4.8 39.6 1.0

Chlorine binding site 2 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 2 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl255

b:38.7
occ:1.00
ND2 B:ASN77 3.3 21.5 1.0
O B:HOH1665 3.4 37.5 1.0
N B:ARG206 3.4 23.7 1.0
CA B:PRO205 3.9 22.4 1.0
CB B:ARG206 4.0 25.3 1.0
NE1 B:TRP203 4.1 24.6 1.0
NH2 C:ARG129 4.1 24.7 1.0
C B:PRO205 4.2 22.6 1.0
CZ2 B:TRP203 4.3 25.2 1.0
CG B:ASN77 4.3 24.4 1.0
CA B:ARG206 4.4 25.1 1.0
OD1 B:ASN77 4.4 27.4 1.0
CE2 B:TRP203 4.5 22.9 1.0
O B:VAL204 4.6 21.5 1.0
CB B:PRO205 4.7 22.2 1.0

Chlorine binding site 3 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 3 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl257

b:38.2
occ:1.00
ND2 C:ASN77 3.2 19.0 1.0
O C:HOH1177 3.3 29.9 1.0
N C:ARG206 3.3 23.5 1.0
CA C:PRO205 3.9 22.5 1.0
CB C:ARG206 4.0 25.4 1.0
NH2 B:ARG129 4.1 24.9 1.0
O B:HOH1185 4.1 31.3 1.0
C C:PRO205 4.1 22.8 1.0
NE1 C:TRP203 4.2 24.3 1.0
CG C:ASN77 4.2 22.4 1.0
CA C:ARG206 4.3 25.2 1.0
NH1 C:ARG206 4.4 44.7 1.0
CZ2 C:TRP203 4.4 25.8 1.0
OD1 C:ASN77 4.5 24.1 1.0
CB C:PRO205 4.5 23.1 1.0
CE2 C:TRP203 4.6 24.7 1.0
O C:VAL204 4.7 21.8 1.0
CZ3 C:TRP208 5.0 28.4 1.0

Chlorine binding site 4 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 4 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl258

b:40.7
occ:1.00
ND2 D:ASN77 3.1 19.8 1.0
O D:HOH820 3.3 27.0 1.0
O D:HOH1848 3.3 38.8 1.0
N D:ARG206 3.4 23.4 1.0
CA D:PRO205 3.8 22.6 1.0
O D:HOH2093 4.0 46.2 1.0
NH2 E:ARG129 4.1 21.8 1.0
CB D:ARG206 4.1 26.3 1.0
C D:PRO205 4.2 22.8 1.0
CG D:ASN77 4.2 24.2 1.0
NE1 D:TRP203 4.3 22.9 1.0
CZ2 D:TRP203 4.3 24.9 1.0
OD1 D:ASN77 4.4 24.3 1.0
CA D:ARG206 4.4 25.1 1.0
CB D:PRO205 4.5 22.8 1.0
O D:VAL204 4.5 21.4 1.0
CE2 D:TRP203 4.6 21.9 1.0
N D:PRO205 5.0 21.6 1.0

Chlorine binding site 5 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 5 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl257

b:52.8
occ:1.00
O E:HOH841 2.9 25.9 1.0
N E:GLU82 3.1 27.1 1.0
OE1 E:GLU82 3.3 54.0 1.0
N E:GLY79 3.3 22.3 1.0
N E:ARG81 3.5 24.3 1.0
CA E:GLY79 3.6 23.2 1.0
CB E:GLU82 3.6 30.4 1.0
CB E:ARG81 3.6 27.4 1.0
C E:GLY79 3.7 23.7 1.0
CG E:GLU82 3.8 39.2 1.0
CA E:ARG81 3.8 26.4 1.0
C E:ARG81 3.9 26.4 1.0
CA E:GLU82 3.9 29.8 1.0
CD E:GLU82 3.9 40.3 1.0
N E:GLN80 3.9 23.3 1.0
O E:HOH1758 4.1 39.5 1.0
O E:GLY79 4.2 26.2 1.0
CE1 D:PHE133 4.2 26.5 1.0
C E:GLN80 4.4 24.5 1.0
C E:PRO78 4.4 23.1 1.0
NE E:ARG81 4.5 34.5 1.0
CG1 F:VAL107 4.7 28.7 1.0
CG E:ARG81 4.8 29.0 1.0
CA E:GLN80 4.8 23.4 1.0
CA E:PRO78 4.8 23.1 1.0
CD1 D:PHE133 4.9 26.6 1.0
O E:ASN77 4.9 21.6 1.0
O E:ARG81 4.9 27.8 1.0

Chlorine binding site 6 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 6 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl258

b:36.8
occ:1.00
O E:HOH2136 3.2 38.1 1.0
ND2 E:ASN77 3.2 19.1 1.0
O E:HOH1799 3.3 38.4 1.0
N E:ARG206 3.5 23.5 1.0
O D:HOH1755 3.9 38.3 1.0
CA E:PRO205 4.0 22.2 1.0
CB E:ARG206 4.0 25.0 1.0
NH2 D:ARG129 4.1 24.2 1.0
NE1 E:TRP203 4.2 20.7 1.0
C E:PRO205 4.3 22.7 1.0
CG E:ASN77 4.4 24.1 1.0
CA E:ARG206 4.4 25.4 1.0
CZ2 E:TRP203 4.5 23.6 1.0
CB E:PRO205 4.6 22.4 1.0
OD1 E:ASN77 4.7 27.2 1.0
CE2 E:TRP203 4.7 22.0 1.0
O E:VAL204 4.8 21.3 1.0
O E:HOH1878 4.9 40.3 1.0

Chlorine binding site 7 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 7 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl255

b:36.9
occ:1.00
ND2 F:ASN77 3.3 20.2 1.0
O F:HOH936 3.4 30.9 1.0
N F:ARG206 3.5 24.0 1.0
NH2 A:ARG129 3.8 22.2 1.0
O F:HOH2182 3.9 47.7 1.0
CA F:PRO205 3.9 22.3 1.0
O F:HOH2213 4.0 50.3 1.0
CB F:ARG206 4.1 26.6 1.0
NE1 F:TRP203 4.1 23.9 1.0
CZ2 F:TRP203 4.2 25.1 1.0
C F:PRO205 4.3 22.8 1.0
CG F:ASN77 4.3 22.9 1.0
OD1 F:ASN77 4.4 26.1 1.0
CA F:ARG206 4.5 25.3 1.0
CE2 F:TRP203 4.5 24.9 1.0
CB F:PRO205 4.6 21.3 1.0
O F:VAL204 4.6 21.5 1.0

Chlorine binding site 8 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 8 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl256

b:39.7
occ:1.00
ND2 G:ASN77 3.1 22.6 1.0
O G:HOH958 3.3 31.9 1.0
N G:ARG206 3.3 23.6 1.0
O G:HOH2155 3.7 51.4 1.0
CA G:PRO205 3.8 22.6 1.0
NH2 L:ARG129 4.0 23.5 1.0
CB G:ARG206 4.0 26.0 1.0
C G:PRO205 4.1 23.1 1.0
CG G:ASN77 4.2 23.2 1.0
NE1 G:TRP203 4.2 19.7 1.0
CA G:ARG206 4.3 25.2 1.0
CZ2 G:TRP203 4.3 26.1 1.0
CB G:PRO205 4.4 23.7 1.0
OD1 G:ASN77 4.5 27.4 1.0
O G:VAL204 4.5 21.5 1.0
CE2 G:TRP203 4.6 20.8 1.0
CZ3 G:TRP208 4.9 26.9 1.0
N G:PRO205 4.9 21.3 1.0
O G:ARG206 5.0 21.6 1.0

Chlorine binding site 9 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 9 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl254

b:37.8
occ:1.00
ND2 H:ASN77 3.2 18.7 1.0
O H:HOH949 3.3 28.5 1.0
N H:ARG206 3.4 23.8 1.0
CA H:PRO205 4.0 22.4 1.0
NH2 I:ARG129 4.0 25.7 1.0
CB H:ARG206 4.0 28.3 1.0
NE1 H:TRP203 4.2 23.3 1.0
O H:HOH1280 4.2 33.0 1.0
C H:PRO205 4.2 22.9 1.0
CZ2 H:TRP203 4.3 23.7 1.0
CG H:ASN77 4.3 20.9 1.0
CA H:ARG206 4.3 25.3 1.0
OD1 H:ASN77 4.5 25.9 1.0
CE2 H:TRP203 4.5 22.1 1.0
CB H:PRO205 4.6 22.8 1.0
O H:VAL204 4.7 21.2 1.0
O H:HOH1463 5.0 36.2 1.0

Chlorine binding site 10 out of 13 in 3lub

Go back to Chlorine Binding Sites List in 3lub
Chlorine binding site 10 out of 13 in the Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Putative Creatinine Amidohydrolase (YP_211512.1) From Bacteroides Fragilis Nctc 9343 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl256

b:37.7
occ:1.00
ND2 I:ASN77 3.1 19.4 1.0
O I:HOH1058 3.1 30.2 1.0
N I:ARG206 3.3 23.6 1.0
O I:HOH1994 3.5 45.8 1.0
CA I:PRO205 3.8 22.5 1.0
CB I:ARG206 4.0 24.5 1.0
NH2 H:ARG129 4.0 22.9 1.0
NE1 I:TRP203 4.1 23.6 1.0
C I:PRO205 4.1 22.6 1.0
CZ2 I:TRP203 4.2 24.5 1.0
CG I:ASN77 4.2 22.1 1.0
CA I:ARG206 4.3 24.9 1.0
CB I:PRO205 4.4 23.0 1.0
OD1 I:ASN77 4.4 22.6 1.0
CE2 I:TRP203 4.4 20.6 1.0
O I:VAL204 4.5 21.5 1.0
O I:HOH1502 4.8 36.8 1.0
N I:PRO205 4.9 21.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 09:53:51 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy