Chlorine in PDB 3lv8: 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp

Enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp

All present enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp:
2.7.4.9;

Protein crystallography data

The structure of 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp, PDB code: 3lv8 was solved by A.S.Halavaty, G.Minasov, I.Dubrovska, J.Winsor, L.Shuvalova, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.00 / 1.80
*Space group*	P 4₃ 3 2
*Cell size a, b, c (Å), α, β, γ (°)*	112.973, 112.973, 112.973, 90.00, 90.00, 90.00
*R / R_free (%)*	16.4 / 20.4

Other elements in 3lv8:

Calcium

(Ca)

6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp (pdb code 3lv8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp, PDB code: 3lv8:

Chlorine binding site 1 out of 1 in 3lv8

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Chlorine Binding Sites List in 3lv8

Chlorine binding site 1 out of 1 in the 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl222 b:32.9 occ:1.00	O	A:HOH362	2.6	18.5	1.0
	O	A:HOH411	3.0	22.1	1.0
	NH1	A:ARG111	3.2	18.1	1.0
	O	A:HOH505	3.2	27.8	1.0
	CD	A:ARG111	3.5	16.3	1.0
	O	A:HOH352	3.6	24.9	1.0
	CE	A:MET160	3.7	21.1	1.0
	O	A:GLY110	3.9	14.6	1.0
	CD1	A:PHE164	4.0	15.1	1.0
	CA	A:ARG111	4.0	14.1	1.0
	CZ	A:ARG111	4.2	17.0	1.0
	CE1	A:PHE164	4.3	14.9	1.0
	NE	A:ARG111	4.3	14.4	1.0
	O	A:HOH279	4.4	37.8	1.0
	NH2	A:ARG167	4.5	16.3	1.0
	C	A:GLY110	4.5	14.3	1.0
	N	A:ARG111	4.6	14.1	1.0
	CG	A:ARG111	4.6	14.9	1.0
	CB	A:ARG111	4.7	13.6	1.0
	OD1	A:ASP65	4.7	21.4	1.0
	SD	A:MET160	4.7	18.8	1.0
	O	A:HOH329	4.7	11.4	1.0
	O	A:ARG111	4.9	15.1	1.0
	C	A:ARG111	4.9	14.7	1.0

Reference:

A.S.Halavaty, G.Minasov, I.Dubrovska, J.Winsor, L.Shuvalova, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.8 Angstrom Resolution Crystal Structure of A Thymidylate Kinase (Tmk) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 in Complex with Tmp, Thymidine-5'-Diphosphate and Adp To Be Published.

Page generated: Sat Jul 20 23:40:57 2024

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