Chlorine in PDB 3lz1: Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2)

The structure of Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2), PDB code: 3lz1 was solved by D.Vasudevan, E.Y.D.Chua, C.A.Davey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	93.04 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	107.370, 109.660, 175.750, 90.00, 90.00, 90.00
R / Rfree (%)	26.9 / 31.9

The structure of Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2) also contains other interesting chemical elements:

Manganese

(Mn)

6 atoms

The binding sites of Chlorine atom in the Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2) (pdb code 3lz1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2), PDB code: 3lz1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1101 b:83.9 occ:1.00 N C:GLY46 3.1 84.7 1.0 N C:ALA45 3.3 85.8 1.0 CA C:GLY44 3.4 85.6 1.0 C C:GLY44 3.6 85.6 1.0 N D:SER88 3.6 79.5 1.0 CB D:THR87 3.7 79.7 1.0 CA C:GLY46 3.7 84.2 1.0 OP1 J:DT38 3.7 0.1 1.0 CA D:THR87 3.8 79.7 1.0 N C:ALA47 3.9 83.6 1.0 C C:ALA45 4.1 85.4 1.0 C D:THR87 4.2 79.9 1.0 CA C:ALA45 4.3 85.6 1.0 C C:GLY46 4.3 84.0 1.0 O C:GLY44 4.5 85.4 1.0 OG D:SER88 4.5 79.4 1.0 CB D:SER88 4.5 79.0 1.0 N C:GLY44 4.6 85.7 1.0 CG2 D:THR87 4.6 79.3 1.0 OG1 D:THR87 4.6 79.5 1.0 CA D:SER88 4.7 79.0 1.0 CB C:ALA47 4.8 82.7 1.0 CA C:ALA47 4.9 82.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 Dna Sequence (Orientation 2) within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl1102 b:87.7 occ:1.00 N G:GLY46 2.8 76.6 1.0 N G:ALA45 3.2 80.1 1.0 CA G:GLY46 3.4 75.4 1.0 N G:ALA47 3.4 73.9 1.0 CA G:GLY44 3.5 81.4 1.0 CG2 H:THR87 3.5 83.5 1.0 OG H:SER88 3.5 80.8 1.0 CB H:THR87 3.5 82.5 1.0 N H:SER88 3.5 81.1 1.0 C G:GLY44 3.6 80.9 1.0 CA H:THR87 3.7 82.6 1.0 C G:GLY46 3.8 74.4 1.0 C G:ALA45 3.9 77.9 1.0 CA G:ALA45 4.1 78.9 1.0 C H:THR87 4.1 81.9 1.0 CB H:SER88 4.4 80.3 1.0 CB G:ALA47 4.5 73.1 1.0 CA G:ALA47 4.5 73.3 1.0 OP1 I:DG38 4.5 0.0 1.0 CA H:SER88 4.6 80.3 1.0 O G:GLY44 4.6 81.5 1.0 N G:GLY44 4.6 82.3 1.0 OG1 H:THR87 4.9 83.0 1.0 O G:GLY46 4.9 73.9 1.0 N H:THR87 5.0 83.3 1.0

D.Vasudevan, E.Y.Chua, C.A.Davey. Crystal Structures of Nucleosome Core Particles Containing the '601' Strong Positioning Sequence J.Mol.Biol. V. 403 1 2010.
ISSN: ISSN 0022-2836
PubMed: 20800598
DOI: 10.1016/J.JMB.2010.08.039