Atomistry » Chlorine » PDB 3lz0-3m96 » 3m1u
Atomistry »
  Chlorine »
    PDB 3lz0-3m96 »
      3m1u »

Chlorine in PDB 3m1u: Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution, PDB code: 3m1u was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.337, 54.465, 122.982, 90.00, 94.06, 90.00
R / Rfree (%) 13.9 / 17.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution (pdb code 3m1u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution, PDB code: 3m1u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 1 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl17

b:29.4
occ:1.00
 N A:ASP68 3.2 18.4 1.0
O A:HOH931 3.5 39.1 1.0
CA A:ASP68 3.7 19.1 1.0
CB A:ASP68 3.7 22.7 1.0
N A:ARG69 3.7 17.0 1.0
C A:ASP68 3.8 20.0 1.0
N A:ALA67 3.8 11.8 1.0
C A:GLY66 3.8 16.6 1.0
CA A:GLY66 4.1 17.1 1.0
C A:ALA67 4.3 19.0 1.0
O A:HOH597 4.3 18.2 1.0
O A:GLY66 4.3 13.1 1.0
OD2 A:ASP68 4.5 39.2 1.0
CG A:ASP68 4.5 27.5 1.0
O A:ASP68 4.5 21.6 1.0
CA A:ARG69 4.5 17.0 1.0
CA A:ALA67 4.5 15.8 1.0
CB A:ARG69 4.6 17.9 1.0

Chlorine binding site 2 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 2 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl18

b:30.6
occ:1.00
 O A:HOH470 3.1 13.6 1.0
NH2 A:ARG87 3.1 29.1 1.0
NE1 A:TRP347 3.2 16.4 1.0
NH1 A:ARG87 3.5 31.9 1.0
CA A:PRO349 3.7 14.6 1.0
CB A:PRO349 3.7 15.4 1.0
CZ A:ARG87 3.7 35.8 1.0
CE2 A:TRP347 3.9 10.8 1.0
O A:ALA209 3.9 18.4 1.0
CZ2 A:TRP347 3.9 15.4 1.0
CA A:PHE210 3.9 12.7 1.0
CB A:PHE210 4.0 15.1 1.0
CD1 A:TRP347 4.4 15.7 1.0
N A:PRO349 4.5 14.0 1.0
C A:ALA209 4.6 17.2 1.0
N A:PHE210 4.7 13.6 1.0
N A:ARG350 4.8 15.7 1.0
C A:PRO349 4.8 15.3 1.0
O A:PHE210 4.8 14.3 1.0
CG A:PRO349 4.9 14.1 1.0
O A:HOH832 4.9 43.5 1.0
C A:PHE210 4.9 16.5 1.0
NE A:ARG87 4.9 28.2 1.0
O A:LEU348 4.9 15.1 1.0

Chlorine binding site 3 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 3 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl21

b:25.4
occ:1.00
 N A:GLY173 3.1 21.6 1.0
O A:HOH584 3.1 22.9 1.0
NE1 A:TRP411 3.3 13.8 1.0
O A:HOH779 3.3 44.4 1.0
CA A:GLY173 3.8 22.1 1.0
CG A:ARG423 3.8 17.5 1.0
CB A:ARG423 4.0 14.9 1.0
C A:ALA172 4.1 23.3 1.0
CE2 A:TRP411 4.1 14.7 1.0
CA A:ALA172 4.2 26.2 1.0
CZ2 A:TRP411 4.3 13.8 1.0
CD1 A:TRP411 4.3 14.2 1.0
CE2 A:PHE178 4.3 14.9 1.0
O A:HOH747 4.5 28.5 1.0
C A:GLY173 4.9 21.8 1.0
CB A:ALA172 4.9 26.7 1.0
CD2 A:PHE178 5.0 13.2 1.0

Chlorine binding site 4 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 4 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl23

b:23.7
occ:0.50
 CL A:CL23 0.0 23.7 0.5
CL A:CL23 2.0 26.1 0.5
N A:ARG414 3.0 17.5 1.0
NH1 A:ARG452 3.1 26.1 1.0
O3 A:GOL8 3.2 35.0 1.0
CG A:ARG414 3.5 27.0 1.0
NH2 A:ARG452 3.6 24.2 1.0
CA A:ILE413 3.6 14.7 1.0
CB A:ARG414 3.7 24.0 1.0
O A:GLY412 3.7 14.6 1.0
C A:ILE413 3.8 16.5 1.0
CZ A:ARG452 3.8 28.3 1.0
CD A:ARG414 3.9 37.5 1.0
CD2 A:LEU449 3.9 20.8 1.0
CA A:ARG414 4.0 20.1 1.0
O A:HOH668 4.2 35.8 1.0
NE A:ARG414 4.3 39.0 1.0
C3 A:GOL8 4.4 35.5 1.0
CG2 A:ILE413 4.5 14.6 1.0
C A:GLY412 4.5 15.6 1.0
N A:ILE413 4.6 13.8 1.0
O A:HOH799 4.6 30.6 1.0
CB A:ILE413 4.6 14.9 1.0
CD1 A:ILE413 4.7 19.1 1.0
O A:ILE413 5.0 14.5 1.0
CG A:LEU449 5.0 15.8 1.0

Chlorine binding site 5 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 5 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl23

b:26.1
occ:0.50
 CL A:CL23 0.0 26.1 0.5
CL A:CL23 2.0 23.7 0.5
O A:HOH668 3.0 35.8 1.0
O A:HOH531 3.4 17.0 1.0
NH1 A:ARG452 3.6 26.1 1.0
CG2 A:ILE413 3.8 14.6 1.0
CD2 A:LEU449 3.9 20.8 1.0
N A:ARG414 3.9 17.5 1.0
CD1 A:ILE413 4.0 19.1 1.0
CA A:ILE413 4.1 14.7 1.0
N A:LEU449 4.2 15.8 1.0
CG A:LEU449 4.3 15.8 1.0
C A:GLY448 4.4 18.6 1.0
CB A:ILE413 4.4 14.9 1.0
CA A:GLY448 4.4 17.9 1.0
O A:HOH837 4.4 28.3 1.0
C A:ILE413 4.5 16.5 1.0
CZ A:ARG452 4.6 28.3 1.0
O A:HOH612 4.6 21.5 1.0
NH2 A:ARG452 4.8 24.2 1.0
CG1 A:ILE413 4.8 15.0 1.0
CB A:ARG414 4.8 24.0 1.0
CA A:LEU449 4.8 14.5 1.0
ND2 A:ASN443 4.9 25.1 1.0
O3 A:GOL8 4.9 35.0 1.0
CA A:ARG414 4.9 20.1 1.0
O A:GLY448 5.0 15.8 1.0

Chlorine binding site 6 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 6 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl16

b:29.0
occ:1.00
 O B:HOH817 3.2 31.0 1.0
O B:HOH810 3.2 28.4 1.0
O B:HOH733 3.2 28.2 1.0
O B:HOH485 3.2 14.1 1.0
NE1 B:TRP347 3.2 17.8 1.0
O B:ALA209 3.7 17.6 1.0
CA B:PRO349 3.7 16.6 1.0
CB B:PRO349 3.8 15.8 1.0
CZ2 B:TRP347 3.8 15.7 1.0
CE2 B:TRP347 3.9 14.0 1.0
CA B:PHE210 3.9 13.8 1.0
CB B:PHE210 3.9 15.8 1.0
CD1 B:TRP347 4.4 19.3 1.0
C B:ALA209 4.4 16.1 1.0
O B:HOH700 4.5 38.1 1.0
N B:PRO349 4.5 14.8 1.0
N B:PHE210 4.6 13.5 1.0
N B:ARG350 4.8 15.6 1.0
O B:PHE210 4.8 16.6 1.0
C B:PRO349 4.8 15.7 1.0
C B:PHE210 4.8 16.2 1.0

Chlorine binding site 7 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 7 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl19

b:26.1
occ:1.00
 NZ B:LYS64 3.1 17.1 1.0
N B:GLU401 3.2 16.4 1.0
O B:HOH673 3.4 23.7 1.0
CA B:HIS400 3.7 13.8 1.0
ND1 B:HIS400 3.8 15.7 1.0
CD B:LYS64 4.0 22.2 1.0
C B:HIS400 4.0 15.9 1.0
O B:LEU399 4.0 15.0 1.0
CE B:LYS64 4.1 20.8 1.0
CA B:GLU401 4.2 17.7 1.0
CG B:GLU401 4.3 22.2 1.0
CG B:HIS400 4.3 14.3 1.0
CE1 B:HIS400 4.4 19.3 1.0
CB B:HIS400 4.6 16.2 1.0
N B:HIS400 4.6 13.7 1.0
C B:LEU399 4.7 13.9 1.0
CB B:GLU401 4.9 18.3 1.0

Chlorine binding site 8 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 8 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl20

b:27.1
occ:1.00
 N B:GLY437 3.0 14.8 1.0
O B:HOH800 3.1 27.2 1.0
N B:LEU449 3.3 17.9 1.0
CA B:GLY448 3.3 20.6 1.0
O B:HOH815 3.4 27.1 1.0
CA B:GLY437 3.6 19.9 1.0
ND2 B:ASN443 3.6 27.0 1.0
N B:PRO436 3.7 15.2 1.0
C B:ARG435 3.8 17.2 1.0
CD B:PRO436 3.8 15.7 1.0
CA B:ARG435 3.8 14.2 1.0
C B:GLY448 3.8 19.7 1.0
CG B:LEU449 3.9 15.3 1.0
C B:GLY437 4.1 21.8 1.0
CG B:PRO436 4.2 18.9 1.0
CD1 B:ILE413 4.2 21.9 1.0
C B:PRO436 4.2 18.3 1.0
O B:ARG435 4.4 17.1 1.0
N B:LEU438 4.4 22.0 1.0
CA B:LEU449 4.4 16.2 1.0
CB B:LEU449 4.4 14.0 1.0
CB B:ARG435 4.4 15.0 1.0
CA B:PRO436 4.5 17.7 1.0
CD2 B:LEU449 4.5 21.0 1.0
N B:GLY448 4.6 19.1 1.0
CG B:ASN443 4.7 26.8 1.0
O B:THR434 4.8 16.3 1.0
O B:GLY437 4.8 22.0 1.0
CD1 B:LEU449 4.9 16.8 1.0
OD1 B:ASN443 4.9 26.9 1.0
CB B:PRO436 4.9 17.7 1.0
N B:ARG435 5.0 15.2 1.0
CG B:ARG435 5.0 16.3 1.0

Chlorine binding site 9 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 9 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl22

b:31.1
occ:1.00
 N B:GLY173 3.1 21.8 1.0
O B:HOH660 3.2 23.4 1.0
NE1 B:TRP411 3.3 15.3 1.0
CG B:ARG423 3.7 20.6 1.0
CA B:GLY173 3.8 22.7 1.0
CB B:ARG423 3.9 16.4 1.0
CE2 B:TRP411 4.0 15.8 1.0
CZ2 B:TRP411 4.1 15.7 1.0
C B:ALA172 4.1 23.1 1.0
CA B:ALA172 4.3 24.1 1.0
CD1 B:TRP411 4.3 13.2 1.0
CE2 B:PHE178 4.6 19.4 1.0
O B:HOH577 4.7 33.0 1.0
O B:HOH882 4.7 30.4 1.0
CB B:ALA172 4.7 25.6 1.0
CG2 B:VAL425 4.8 12.2 1.0
C B:GLY173 4.8 19.4 1.0
CD B:ARG423 5.0 21.4 1.0

Chlorine binding site 10 out of 10 in 3m1u

Go back to Chlorine Binding Sites List in 3m1u
Chlorine binding site 10 out of 10 in the Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of A Putative Gamma-D-Glutamyl-L-Diamino Acid Endopeptidase (DVU_0896) From Desulfovibrio Vulgaris Hildenborough at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl24

b:29.9
occ:0.50
 N B:ASP68 3.1 18.9 1.0
C B:GLY66 3.6 18.6 1.0
N B:ALA67 3.6 17.1 1.0
CB B:ASP68 3.6 23.3 1.0
CA B:ASP68 3.6 21.3 1.0
N B:ARG69 3.7 19.1 1.0
C B:ASP68 3.7 20.2 1.0
CA B:GLY66 3.9 16.6 1.0
O B:GLY66 4.0 20.8 1.0
C B:ALA67 4.2 19.1 1.0
O B:HOH596 4.3 18.1 1.0
CA B:ALA67 4.4 18.6 1.0
CG B:ASP68 4.5 27.8 1.0
O B:ASP68 4.5 24.8 1.0
CA B:ARG69 4.5 20.6 1.0
OD2 B:ASP68 4.6 39.5 1.0
CB B:ARG69 4.7 21.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 09:54:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy