Chlorine in PDB 3mhx: Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Protein crystallography data
The structure of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor, PDB code: 3mhx
was solved by
S.-H.Chou,
Y.-C.Su,
K.-H.Chin,
H.-C.Hung,
G.-H.Shen,
A.H.-J.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.43 /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.015,
54.031,
61.035,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.1 /
22.8
|
Other elements in 3mhx:
The structure of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
(pdb code 3mhx). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor, PDB code: 3mhx:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 3mhx
Go back to
Chlorine Binding Sites List in 3mhx
Chlorine binding site 1 out
of 5 in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2005
b:9.3
occ:1.00
|
ZN
|
A:ZN2008
|
2.3
|
7.7
|
1.0
|
OE2
|
B:GLU52
|
3.3
|
15.2
|
1.0
|
CG1
|
A:ILE26
|
3.4
|
13.2
|
1.0
|
N
|
A:ILE26
|
3.4
|
6.9
|
1.0
|
N
|
A:ALA25
|
3.5
|
6.7
|
1.0
|
OD1
|
A:ASP24
|
3.5
|
11.2
|
1.0
|
NE2
|
A:HIS21
|
3.6
|
9.7
|
1.0
|
O
|
B:HOH138
|
3.7
|
22.8
|
1.0
|
CD1
|
A:ILE26
|
3.7
|
14.2
|
1.0
|
NH2
|
A:ARG72
|
3.9
|
9.0
|
1.0
|
CL
|
B:CL2004
|
3.9
|
5.6
|
1.0
|
CB
|
A:ILE26
|
3.9
|
10.0
|
1.0
|
CE1
|
A:HIS21
|
4.0
|
10.3
|
1.0
|
OE1
|
B:GLU52
|
4.0
|
10.7
|
1.0
|
CB
|
A:ALA25
|
4.0
|
8.0
|
1.0
|
CD
|
B:GLU52
|
4.0
|
12.5
|
1.0
|
CA
|
A:ALA25
|
4.1
|
7.2
|
1.0
|
C
|
A:ALA25
|
4.2
|
8.0
|
1.0
|
C
|
A:ASP24
|
4.2
|
6.9
|
1.0
|
CA
|
A:ILE26
|
4.3
|
8.0
|
1.0
|
CA
|
A:ASP24
|
4.4
|
8.3
|
1.0
|
CG
|
A:ASP24
|
4.5
|
9.4
|
1.0
|
CD2
|
A:HIS21
|
4.9
|
8.1
|
1.0
|
CZ
|
A:ARG72
|
4.9
|
8.9
|
1.0
|
O
|
A:ASN23
|
4.9
|
11.5
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 3mhx
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Chlorine Binding Sites List in 3mhx
Chlorine binding site 2 out
of 5 in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2001
b:6.6
occ:1.00
|
ZN
|
A:ZN2007
|
2.4
|
8.1
|
1.0
|
NH2
|
B:ARG72
|
3.2
|
10.3
|
1.0
|
N
|
A:SER68
|
3.3
|
7.3
|
1.0
|
NE2
|
B:HIS21
|
3.5
|
12.7
|
1.0
|
CB
|
A:SER68
|
3.6
|
6.2
|
1.0
|
OE1
|
A:GLU52
|
3.6
|
11.1
|
1.0
|
CD2
|
B:HIS21
|
3.7
|
11.6
|
1.0
|
OG
|
A:SER68
|
3.7
|
7.0
|
1.0
|
N
|
A:ILE67
|
3.8
|
7.3
|
1.0
|
CL
|
B:CL2006
|
3.9
|
14.8
|
1.0
|
CB
|
A:ILE67
|
4.0
|
9.2
|
1.0
|
CA
|
A:SER68
|
4.0
|
7.0
|
1.0
|
CD1
|
B:ILE26
|
4.0
|
14.6
|
1.0
|
CB
|
A:ARG66
|
4.1
|
9.7
|
1.0
|
CL
|
B:CL2003
|
4.1
|
8.5
|
1.0
|
C
|
A:ILE67
|
4.2
|
5.2
|
1.0
|
CA
|
A:ILE67
|
4.2
|
7.1
|
1.0
|
CZ
|
B:ARG72
|
4.4
|
8.5
|
1.0
|
C
|
A:ARG66
|
4.5
|
7.5
|
1.0
|
CD
|
A:GLU52
|
4.6
|
9.5
|
1.0
|
CD1
|
B:LEU20
|
4.7
|
16.7
|
1.0
|
CD
|
A:ARG66
|
4.8
|
14.2
|
1.0
|
CE1
|
B:HIS21
|
4.8
|
12.9
|
1.0
|
NH1
|
B:ARG72
|
4.8
|
4.7
|
1.0
|
OE2
|
A:GLU52
|
4.8
|
12.6
|
1.0
|
CA
|
A:ARG66
|
4.8
|
7.1
|
1.0
|
CG2
|
A:ILE67
|
4.8
|
11.1
|
1.0
|
CG
|
A:ARG66
|
4.9
|
11.3
|
1.0
|
CG1
|
A:ILE67
|
5.0
|
9.4
|
1.0
|
CG1
|
B:ILE26
|
5.0
|
14.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 3mhx
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Chlorine Binding Sites List in 3mhx
Chlorine binding site 3 out
of 5 in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2003
b:8.5
occ:1.00
|
OG
|
B:SER68
|
2.9
|
6.4
|
1.0
|
OG
|
A:SER68
|
3.1
|
7.0
|
1.0
|
NH1
|
B:ARG72
|
3.1
|
4.7
|
1.0
|
CD1
|
B:ILE26
|
3.4
|
14.6
|
1.0
|
NH1
|
A:ARG66
|
3.4
|
12.8
|
1.0
|
CB
|
A:SER68
|
3.6
|
6.2
|
1.0
|
CB
|
B:SER68
|
3.8
|
7.4
|
1.0
|
CG
|
B:GLU69
|
3.8
|
9.9
|
1.0
|
O
|
A:HOH177
|
3.9
|
5.8
|
1.0
|
NH2
|
B:ARG72
|
4.0
|
10.3
|
1.0
|
CZ
|
B:ARG72
|
4.0
|
8.5
|
1.0
|
CD
|
B:ARG66
|
4.0
|
10.1
|
1.0
|
CL
|
B:CL2001
|
4.1
|
6.6
|
1.0
|
CD
|
A:ARG66
|
4.2
|
14.2
|
1.0
|
C
|
B:SER68
|
4.2
|
7.5
|
1.0
|
N
|
B:GLU69
|
4.3
|
7.5
|
1.0
|
O
|
B:SER68
|
4.4
|
8.0
|
1.0
|
CZ
|
A:ARG66
|
4.5
|
15.1
|
1.0
|
NH1
|
B:ARG66
|
4.6
|
13.0
|
1.0
|
CG
|
B:ARG66
|
4.6
|
9.8
|
1.0
|
CA
|
B:GLU69
|
4.6
|
8.1
|
1.0
|
CA
|
B:SER68
|
4.6
|
6.0
|
1.0
|
NE
|
B:ARG66
|
4.7
|
12.8
|
1.0
|
CG1
|
B:ILE26
|
4.8
|
14.0
|
1.0
|
NE
|
A:ARG66
|
4.8
|
14.7
|
1.0
|
CD
|
B:GLU69
|
4.8
|
11.0
|
1.0
|
CB
|
B:GLU69
|
4.8
|
9.4
|
1.0
|
OE2
|
B:GLU69
|
4.8
|
12.5
|
1.0
|
CZ
|
B:ARG66
|
5.0
|
13.9
|
1.0
|
CG2
|
B:ILE26
|
5.0
|
8.0
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 3mhx
Go back to
Chlorine Binding Sites List in 3mhx
Chlorine binding site 4 out
of 5 in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2004
b:5.6
occ:1.00
|
ZN
|
A:ZN2008
|
2.4
|
7.7
|
1.0
|
NH2
|
A:ARG72
|
3.2
|
9.0
|
1.0
|
N
|
B:SER68
|
3.3
|
6.3
|
1.0
|
OE1
|
B:GLU52
|
3.4
|
10.7
|
1.0
|
OG
|
B:SER68
|
3.4
|
6.4
|
1.0
|
NE2
|
A:HIS21
|
3.5
|
9.7
|
1.0
|
CB
|
B:SER68
|
3.7
|
7.4
|
1.0
|
CD
|
B:ARG66
|
3.7
|
10.1
|
1.0
|
N
|
B:ILE67
|
3.7
|
7.5
|
1.0
|
CG
|
B:ARG66
|
3.8
|
9.8
|
1.0
|
CD2
|
A:HIS21
|
3.8
|
8.1
|
1.0
|
O
|
A:HOH177
|
3.9
|
5.8
|
1.0
|
CL
|
A:CL2005
|
3.9
|
9.3
|
1.0
|
CB
|
B:ARG66
|
3.9
|
7.4
|
1.0
|
CA
|
B:SER68
|
4.1
|
6.0
|
1.0
|
CB
|
B:ILE67
|
4.1
|
8.9
|
1.0
|
CD2
|
A:LEU20
|
4.2
|
16.7
|
1.0
|
CA
|
B:ILE67
|
4.2
|
6.5
|
1.0
|
C
|
B:ILE67
|
4.2
|
5.7
|
1.0
|
CD1
|
A:ILE26
|
4.2
|
14.2
|
1.0
|
CZ
|
A:ARG72
|
4.3
|
8.9
|
1.0
|
C
|
B:ARG66
|
4.4
|
6.0
|
1.0
|
CD
|
B:GLU52
|
4.5
|
12.5
|
1.0
|
NH1
|
A:ARG72
|
4.6
|
9.4
|
1.0
|
CA
|
B:ARG66
|
4.7
|
6.7
|
1.0
|
CE1
|
A:HIS21
|
4.8
|
10.3
|
1.0
|
OE2
|
B:GLU52
|
4.8
|
15.2
|
1.0
|
NE
|
B:ARG66
|
4.9
|
12.8
|
1.0
|
CG2
|
B:ILE67
|
4.9
|
10.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 3mhx
Go back to
Chlorine Binding Sites List in 3mhx
Chlorine binding site 5 out
of 5 in the Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting As A Bacterial Ferrous Iron Transport Activating Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2006
b:14.8
occ:1.00
|
ZN
|
A:ZN2007
|
2.2
|
8.1
|
1.0
|
OE2
|
A:GLU52
|
3.1
|
12.6
|
1.0
|
CG1
|
B:ILE26
|
3.3
|
14.0
|
1.0
|
N
|
B:ILE26
|
3.4
|
8.1
|
1.0
|
N
|
B:ALA25
|
3.4
|
10.6
|
1.0
|
OD1
|
B:ASP24
|
3.5
|
10.7
|
1.0
|
NE2
|
B:HIS21
|
3.7
|
12.7
|
1.0
|
CD1
|
B:ILE26
|
3.8
|
14.6
|
1.0
|
OE1
|
A:GLU52
|
3.8
|
11.1
|
1.0
|
CD
|
A:GLU52
|
3.8
|
9.5
|
1.0
|
CL
|
B:CL2001
|
3.9
|
6.6
|
1.0
|
CB
|
B:ILE26
|
3.9
|
9.3
|
1.0
|
CB
|
B:ALA25
|
4.0
|
12.2
|
1.0
|
CA
|
B:ALA25
|
4.1
|
10.5
|
1.0
|
CE1
|
B:HIS21
|
4.1
|
12.9
|
1.0
|
C
|
B:ASP24
|
4.2
|
10.4
|
1.0
|
C
|
B:ALA25
|
4.2
|
9.5
|
1.0
|
CA
|
B:ILE26
|
4.3
|
8.9
|
1.0
|
CA
|
B:ASP24
|
4.3
|
9.9
|
1.0
|
NH2
|
B:ARG72
|
4.3
|
10.3
|
1.0
|
CG
|
B:ASP24
|
4.4
|
11.2
|
1.0
|
O
|
B:ASN23
|
4.9
|
12.2
|
1.0
|
CD2
|
B:HIS21
|
4.9
|
11.6
|
1.0
|
CB
|
B:ASP24
|
5.0
|
11.0
|
1.0
|
|
Reference:
Y.-C.Su,
K.-H.Chin,
H.-C.Hung,
G.-H.Shen,
A.H.-J.Wang,
S.-H.Chou.
Structure of Stenotrophomonas Maltophilia Feoa Complexed with Zinc: A Unique Prokaryotic SH3-Domain Protein That Possibly Acts As A Bacterial Ferrous Iron-Transport Activating Factor Acta Crystallogr.,Sect.F V. 66 636 2010.
ISSN: ESSN 1744-3091
PubMed: 20516589
DOI: 10.1107/S1744309110013941
Page generated: Sun Jul 21 00:12:36 2024
|