Chlorine in PDB 3mst: Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution, PDB code: 3mst
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.13 /
1.35
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
35.042,
80.040,
42.522,
90.00,
104.67,
90.00
|
R / Rfree (%)
|
11.9 /
15.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
(pdb code 3mst). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution, PDB code: 3mst:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 3mst
Go back to
Chlorine Binding Sites List in 3mst
Chlorine binding site 1 out
of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl227
b:15.2
occ:1.00
|
NH1
|
A:ARG128
|
3.0
|
9.5
|
0.5
|
NH2
|
A:ARG128
|
3.0
|
18.2
|
0.5
|
OG
|
A:SER140
|
3.0
|
12.6
|
1.0
|
N
|
A:ILE59
|
3.2
|
8.9
|
1.0
|
N
|
A:SER140
|
3.2
|
10.2
|
1.0
|
O2
|
A:UNL226
|
3.3
|
22.2
|
1.0
|
CZ
|
A:ARG128
|
3.4
|
20.1
|
0.5
|
O
|
A:ILE59
|
3.5
|
11.2
|
1.0
|
CA
|
A:ARG58
|
3.5
|
10.3
|
1.0
|
CB
|
A:SER140
|
3.6
|
11.8
|
1.0
|
O3
|
A:UNL226
|
3.7
|
36.1
|
1.0
|
O
|
A:LEU138
|
3.7
|
16.8
|
1.0
|
C
|
A:ARG58
|
3.9
|
10.4
|
1.0
|
CA
|
A:SER140
|
4.0
|
9.4
|
1.0
|
O
|
A:VAL57
|
4.0
|
10.9
|
1.0
|
O1
|
A:UNL226
|
4.1
|
13.5
|
1.0
|
C
|
A:PRO139
|
4.2
|
12.5
|
1.0
|
CA
|
A:PRO139
|
4.2
|
12.8
|
1.0
|
C
|
A:ILE59
|
4.2
|
10.4
|
1.0
|
CB
|
A:ARG58
|
4.2
|
10.9
|
1.0
|
CA
|
A:ILE59
|
4.3
|
9.2
|
1.0
|
O4
|
A:UNL226
|
4.4
|
30.0
|
1.0
|
CG
|
A:ARG58
|
4.5
|
12.3
|
1.0
|
N
|
A:ARG58
|
4.6
|
9.1
|
1.0
|
NE
|
A:ARG128
|
4.7
|
21.8
|
0.5
|
C
|
A:LEU138
|
4.7
|
13.5
|
1.0
|
C
|
A:VAL57
|
4.7
|
8.7
|
1.0
|
CE
|
A:MSE61
|
4.9
|
14.2
|
1.0
|
C
|
A:SER140
|
4.9
|
9.0
|
1.0
|
CB
|
A:ILE59
|
4.9
|
9.6
|
1.0
|
N
|
A:CYS141
|
4.9
|
8.9
|
1.0
|
N
|
A:PRO139
|
4.9
|
11.1
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 3mst
Go back to
Chlorine Binding Sites List in 3mst
Chlorine binding site 2 out
of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl228
b:18.7
occ:1.00
|
NH2
|
A:ARG201
|
3.3
|
16.6
|
1.0
|
N
|
A:ILE223
|
3.3
|
12.5
|
1.0
|
NH1
|
A:ARG208
|
3.4
|
17.0
|
1.0
|
CA
|
A:GLU222
|
3.7
|
13.7
|
1.0
|
O
|
A:ILE223
|
3.9
|
16.2
|
1.0
|
C
|
A:GLU222
|
4.0
|
13.4
|
1.0
|
CB
|
A:GLU222
|
4.1
|
16.4
|
1.0
|
O
|
A:HOH327
|
4.1
|
42.9
|
1.0
|
CA
|
A:ILE223
|
4.2
|
13.1
|
1.0
|
CB
|
A:ILE223
|
4.3
|
14.5
|
1.0
|
O
|
A:HOH409
|
4.3
|
60.2
|
1.0
|
CZ
|
A:ARG208
|
4.4
|
16.9
|
1.0
|
CG
|
A:GLU222
|
4.4
|
23.7
|
1.0
|
NH2
|
A:ARG208
|
4.5
|
21.7
|
1.0
|
C
|
A:ILE223
|
4.5
|
14.2
|
1.0
|
CZ
|
A:ARG201
|
4.5
|
13.6
|
1.0
|
O
|
A:ILE221
|
4.7
|
16.4
|
1.0
|
N
|
A:GLU222
|
4.9
|
14.3
|
1.0
|
CG1
|
A:ILE223
|
4.9
|
15.9
|
1.0
|
NH1
|
A:ARG201
|
5.0
|
17.3
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 3mst
Go back to
Chlorine Binding Sites List in 3mst
Chlorine binding site 3 out
of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl229
b:30.0
occ:1.00
|
O
|
A:HOH425
|
2.7
|
44.5
|
1.0
|
O
|
A:HOH361
|
3.1
|
32.1
|
1.0
|
N
|
A:LYS78
|
3.2
|
14.1
|
1.0
|
CB
|
A:ASN99
|
3.6
|
15.5
|
1.0
|
CA
|
A:ARG77
|
3.6
|
11.8
|
0.5
|
CG
|
A:LYS78
|
3.7
|
20.7
|
1.0
|
CB
|
A:ARG77
|
3.7
|
11.6
|
0.5
|
CA
|
A:ARG77
|
3.9
|
15.8
|
0.5
|
CB
|
A:LYS78
|
3.9
|
15.8
|
1.0
|
C
|
A:ARG77
|
3.9
|
12.5
|
0.5
|
CG
|
A:ARG77
|
3.9
|
25.4
|
0.5
|
C
|
A:ARG77
|
4.0
|
14.4
|
0.5
|
CA
|
A:LYS78
|
4.1
|
14.2
|
1.0
|
CD
|
A:LYS78
|
4.3
|
24.2
|
1.0
|
CG
|
A:ASN99
|
4.4
|
15.7
|
1.0
|
CB
|
A:ARG77
|
4.4
|
18.9
|
0.5
|
O
|
A:HOH419
|
4.5
|
37.6
|
1.0
|
NZ
|
A:LYS78
|
4.6
|
28.4
|
1.0
|
CA
|
A:ASN99
|
4.9
|
14.0
|
1.0
|
OD1
|
A:ASN99
|
4.9
|
19.1
|
1.0
|
N
|
A:ARG77
|
4.9
|
12.6
|
0.5
|
NE
|
A:ARG77
|
4.9
|
35.2
|
0.5
|
C
|
A:ASN99
|
4.9
|
14.2
|
1.0
|
CD
|
A:ARG77
|
5.0
|
30.1
|
0.5
|
ND2
|
A:ASN99
|
5.0
|
16.1
|
1.0
|
CE
|
A:LYS78
|
5.0
|
28.1
|
1.0
|
O
|
A:LEU76
|
5.0
|
13.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 3mst
Go back to
Chlorine Binding Sites List in 3mst
Chlorine binding site 4 out
of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl230
b:28.4
occ:1.00
|
O
|
A:HOH415
|
3.0
|
40.7
|
1.0
|
N
|
A:LYS199
|
3.0
|
13.1
|
1.0
|
CA
|
A:THR198
|
3.8
|
11.4
|
1.0
|
CG
|
A:LYS200
|
3.8
|
20.8
|
0.5
|
NZ
|
A:LYS200
|
3.8
|
29.1
|
0.5
|
CA
|
A:LYS199
|
3.9
|
14.7
|
1.0
|
OG1
|
A:THR198
|
3.9
|
14.0
|
1.0
|
C
|
A:THR198
|
3.9
|
12.4
|
1.0
|
N
|
A:LYS200
|
3.9
|
13.3
|
0.5
|
CG
|
A:LYS200
|
3.9
|
19.8
|
0.5
|
N
|
A:LYS200
|
3.9
|
13.0
|
0.5
|
CB
|
A:LYS199
|
4.0
|
18.3
|
1.0
|
O
|
A:HOH241
|
4.0
|
76.7
|
1.0
|
C
|
A:LYS199
|
4.2
|
15.6
|
1.0
|
CB
|
A:THR198
|
4.4
|
13.1
|
1.0
|
CE
|
A:LYS200
|
4.5
|
27.1
|
0.5
|
CD
|
A:LYS200
|
4.5
|
24.3
|
0.5
|
O
|
A:VAL197
|
4.6
|
13.0
|
1.0
|
CG
|
A:LYS199
|
4.6
|
22.9
|
1.0
|
CE
|
A:LYS200
|
4.7
|
27.4
|
0.5
|
CE
|
A:LYS199
|
4.8
|
34.0
|
1.0
|
CB
|
A:LYS200
|
4.8
|
16.6
|
0.5
|
CD
|
A:LYS200
|
4.8
|
25.7
|
0.5
|
CA
|
A:LYS200
|
4.8
|
13.9
|
0.5
|
CA
|
A:LYS200
|
4.8
|
13.5
|
0.5
|
CB
|
A:LYS200
|
4.8
|
15.8
|
0.5
|
O
|
A:HOH450
|
4.9
|
51.0
|
1.0
|
N
|
A:THR198
|
4.9
|
11.8
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 3mst
Go back to
Chlorine Binding Sites List in 3mst
Chlorine binding site 5 out
of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl231
b:34.0
occ:1.00
|
O
|
A:LEU51
|
2.9
|
15.9
|
1.0
|
N
|
A:GLU222
|
3.0
|
14.3
|
1.0
|
C
|
A:LEU51
|
3.6
|
13.1
|
1.0
|
CA
|
A:ILE221
|
3.6
|
15.6
|
1.0
|
CB
|
A:GLU222
|
3.7
|
16.4
|
1.0
|
C
|
A:ILE221
|
3.8
|
14.9
|
1.0
|
CG
|
A:LYS52
|
3.9
|
17.4
|
1.0
|
CA
|
A:GLU222
|
3.9
|
13.7
|
1.0
|
CG2
|
A:ILE221
|
4.0
|
18.0
|
1.0
|
CD1
|
A:ILE221
|
4.0
|
22.2
|
1.0
|
CA
|
A:LYS52
|
4.0
|
13.6
|
1.0
|
CG
|
A:GLU222
|
4.0
|
23.7
|
1.0
|
O
|
A:ASP220
|
4.1
|
25.7
|
1.0
|
N
|
A:LYS52
|
4.1
|
12.7
|
1.0
|
O
|
A:GLU222
|
4.1
|
13.8
|
1.0
|
CB
|
A:ILE221
|
4.3
|
15.4
|
1.0
|
CD
|
A:GLU222
|
4.4
|
32.6
|
1.0
|
O
|
A:GLY50
|
4.5
|
18.9
|
1.0
|
C
|
A:GLU222
|
4.5
|
13.4
|
1.0
|
CB
|
A:LYS52
|
4.5
|
15.1
|
1.0
|
C
|
A:GLY50
|
4.5
|
17.3
|
1.0
|
N
|
A:LEU51
|
4.6
|
14.9
|
1.0
|
CA
|
A:LEU51
|
4.6
|
13.8
|
1.0
|
OE2
|
A:GLU222
|
4.7
|
42.0
|
1.0
|
CG1
|
A:ILE221
|
4.7
|
18.8
|
1.0
|
N
|
A:ILE221
|
4.7
|
16.9
|
1.0
|
C
|
A:ASP220
|
4.9
|
22.8
|
1.0
|
O
|
A:HOH405
|
4.9
|
38.1
|
1.0
|
O
|
A:ILE221
|
5.0
|
16.4
|
1.0
|
CD
|
A:LYS52
|
5.0
|
20.9
|
1.0
|
OE1
|
A:GLU222
|
5.0
|
36.0
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 00:21:27 2024
|