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Chlorine in PDB 3mst: Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution, PDB code: 3mst was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.13 / 1.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.042, 80.040, 42.522, 90.00, 104.67, 90.00
R / Rfree (%) 11.9 / 15.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution (pdb code 3mst). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution, PDB code: 3mst:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3mst

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Chlorine binding site 1 out of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl227

b:15.2
occ:1.00
 NH1 A:ARG128 3.0 9.5 0.5
NH2 A:ARG128 3.0 18.2 0.5
OG A:SER140 3.0 12.6 1.0
N A:ILE59 3.2 8.9 1.0
N A:SER140 3.2 10.2 1.0
O2 A:UNL226 3.3 22.2 1.0
CZ A:ARG128 3.4 20.1 0.5
O A:ILE59 3.5 11.2 1.0
CA A:ARG58 3.5 10.3 1.0
CB A:SER140 3.6 11.8 1.0
O3 A:UNL226 3.7 36.1 1.0
O A:LEU138 3.7 16.8 1.0
C A:ARG58 3.9 10.4 1.0
CA A:SER140 4.0 9.4 1.0
O A:VAL57 4.0 10.9 1.0
O1 A:UNL226 4.1 13.5 1.0
C A:PRO139 4.2 12.5 1.0
CA A:PRO139 4.2 12.8 1.0
C A:ILE59 4.2 10.4 1.0
CB A:ARG58 4.2 10.9 1.0
CA A:ILE59 4.3 9.2 1.0
O4 A:UNL226 4.4 30.0 1.0
CG A:ARG58 4.5 12.3 1.0
N A:ARG58 4.6 9.1 1.0
NE A:ARG128 4.7 21.8 0.5
C A:LEU138 4.7 13.5 1.0
C A:VAL57 4.7 8.7 1.0
CE A:MSE61 4.9 14.2 1.0
C A:SER140 4.9 9.0 1.0
CB A:ILE59 4.9 9.6 1.0
N A:CYS141 4.9 8.9 1.0
N A:PRO139 4.9 11.1 1.0

Chlorine binding site 2 out of 5 in 3mst

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Chlorine binding site 2 out of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl228

b:18.7
occ:1.00
 NH2 A:ARG201 3.3 16.6 1.0
N A:ILE223 3.3 12.5 1.0
NH1 A:ARG208 3.4 17.0 1.0
CA A:GLU222 3.7 13.7 1.0
O A:ILE223 3.9 16.2 1.0
C A:GLU222 4.0 13.4 1.0
CB A:GLU222 4.1 16.4 1.0
O A:HOH327 4.1 42.9 1.0
CA A:ILE223 4.2 13.1 1.0
CB A:ILE223 4.3 14.5 1.0
O A:HOH409 4.3 60.2 1.0
CZ A:ARG208 4.4 16.9 1.0
CG A:GLU222 4.4 23.7 1.0
NH2 A:ARG208 4.5 21.7 1.0
C A:ILE223 4.5 14.2 1.0
CZ A:ARG201 4.5 13.6 1.0
O A:ILE221 4.7 16.4 1.0
N A:GLU222 4.9 14.3 1.0
CG1 A:ILE223 4.9 15.9 1.0
NH1 A:ARG201 5.0 17.3 1.0

Chlorine binding site 3 out of 5 in 3mst

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Chlorine binding site 3 out of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl229

b:30.0
occ:1.00
 O A:HOH425 2.7 44.5 1.0
O A:HOH361 3.1 32.1 1.0
N A:LYS78 3.2 14.1 1.0
CB A:ASN99 3.6 15.5 1.0
CA A:ARG77 3.6 11.8 0.5
CG A:LYS78 3.7 20.7 1.0
CB A:ARG77 3.7 11.6 0.5
CA A:ARG77 3.9 15.8 0.5
CB A:LYS78 3.9 15.8 1.0
C A:ARG77 3.9 12.5 0.5
CG A:ARG77 3.9 25.4 0.5
C A:ARG77 4.0 14.4 0.5
CA A:LYS78 4.1 14.2 1.0
CD A:LYS78 4.3 24.2 1.0
CG A:ASN99 4.4 15.7 1.0
CB A:ARG77 4.4 18.9 0.5
O A:HOH419 4.5 37.6 1.0
NZ A:LYS78 4.6 28.4 1.0
CA A:ASN99 4.9 14.0 1.0
OD1 A:ASN99 4.9 19.1 1.0
N A:ARG77 4.9 12.6 0.5
NE A:ARG77 4.9 35.2 0.5
C A:ASN99 4.9 14.2 1.0
CD A:ARG77 5.0 30.1 0.5
ND2 A:ASN99 5.0 16.1 1.0
CE A:LYS78 5.0 28.1 1.0
O A:LEU76 5.0 13.4 1.0

Chlorine binding site 4 out of 5 in 3mst

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Chlorine binding site 4 out of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl230

b:28.4
occ:1.00
 O A:HOH415 3.0 40.7 1.0
N A:LYS199 3.0 13.1 1.0
CA A:THR198 3.8 11.4 1.0
CG A:LYS200 3.8 20.8 0.5
NZ A:LYS200 3.8 29.1 0.5
CA A:LYS199 3.9 14.7 1.0
OG1 A:THR198 3.9 14.0 1.0
C A:THR198 3.9 12.4 1.0
N A:LYS200 3.9 13.3 0.5
CG A:LYS200 3.9 19.8 0.5
N A:LYS200 3.9 13.0 0.5
CB A:LYS199 4.0 18.3 1.0
O A:HOH241 4.0 76.7 1.0
C A:LYS199 4.2 15.6 1.0
CB A:THR198 4.4 13.1 1.0
CE A:LYS200 4.5 27.1 0.5
CD A:LYS200 4.5 24.3 0.5
O A:VAL197 4.6 13.0 1.0
CG A:LYS199 4.6 22.9 1.0
CE A:LYS200 4.7 27.4 0.5
CE A:LYS199 4.8 34.0 1.0
CB A:LYS200 4.8 16.6 0.5
CD A:LYS200 4.8 25.7 0.5
CA A:LYS200 4.8 13.9 0.5
CA A:LYS200 4.8 13.5 0.5
CB A:LYS200 4.8 15.8 0.5
O A:HOH450 4.9 51.0 1.0
N A:THR198 4.9 11.8 1.0

Chlorine binding site 5 out of 5 in 3mst

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Chlorine binding site 5 out of 5 in the Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Putative Nitrate Transport Protein (TVN0104) From Thermoplasma Volcanium at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl231

b:34.0
occ:1.00
 O A:LEU51 2.9 15.9 1.0
N A:GLU222 3.0 14.3 1.0
C A:LEU51 3.6 13.1 1.0
CA A:ILE221 3.6 15.6 1.0
CB A:GLU222 3.7 16.4 1.0
C A:ILE221 3.8 14.9 1.0
CG A:LYS52 3.9 17.4 1.0
CA A:GLU222 3.9 13.7 1.0
CG2 A:ILE221 4.0 18.0 1.0
CD1 A:ILE221 4.0 22.2 1.0
CA A:LYS52 4.0 13.6 1.0
CG A:GLU222 4.0 23.7 1.0
O A:ASP220 4.1 25.7 1.0
N A:LYS52 4.1 12.7 1.0
O A:GLU222 4.1 13.8 1.0
CB A:ILE221 4.3 15.4 1.0
CD A:GLU222 4.4 32.6 1.0
O A:GLY50 4.5 18.9 1.0
C A:GLU222 4.5 13.4 1.0
CB A:LYS52 4.5 15.1 1.0
C A:GLY50 4.5 17.3 1.0
N A:LEU51 4.6 14.9 1.0
CA A:LEU51 4.6 13.8 1.0
OE2 A:GLU222 4.7 42.0 1.0
CG1 A:ILE221 4.7 18.8 1.0
N A:ILE221 4.7 16.9 1.0
C A:ASP220 4.9 22.8 1.0
O A:HOH405 4.9 38.1 1.0
O A:ILE221 5.0 16.4 1.0
CD A:LYS52 5.0 20.9 1.0
OE1 A:GLU222 5.0 36.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Jul 21 00:21:27 2024

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