Chlorine in PDB 3mx3: Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution, PDB code: 3mx3
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.18 /
2.00
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
153.350,
87.876,
78.253,
90.00,
116.66,
90.00
|
R / Rfree (%)
|
16.4 /
21.6
|
Other elements in 3mx3:
The structure of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
(pdb code 3mx3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution, PDB code: 3mx3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3mx3
Go back to
Chlorine Binding Sites List in 3mx3
Chlorine binding site 1 out
of 4 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl603
b:21.1
occ:1.00
|
NZ
|
A:LYS192
|
3.0
|
11.8
|
1.0
|
OG
|
A:SER188
|
3.0
|
15.2
|
0.5
|
OG
|
A:SER188
|
3.2
|
11.9
|
0.5
|
CB
|
A:SER188
|
3.5
|
14.1
|
0.5
|
CB
|
A:SER188
|
3.5
|
13.4
|
0.5
|
CE
|
A:LYS192
|
3.7
|
13.8
|
1.0
|
CD
|
A:LYS192
|
3.8
|
13.5
|
1.0
|
CD
|
A:LYS189
|
3.9
|
17.4
|
1.0
|
CG
|
A:LYS189
|
3.9
|
13.1
|
1.0
|
C
|
A:SER188
|
4.0
|
11.1
|
1.0
|
N
|
A:LYS189
|
4.0
|
10.7
|
1.0
|
CE
|
A:LYS189
|
4.0
|
20.4
|
1.0
|
NZ
|
A:LYS189
|
4.0
|
25.6
|
1.0
|
OD1
|
A:ASP235
|
4.2
|
11.6
|
1.0
|
O
|
A:SER188
|
4.3
|
12.1
|
1.0
|
CA
|
A:LYS189
|
4.4
|
11.0
|
1.0
|
CA
|
A:SER188
|
4.4
|
12.8
|
0.5
|
CA
|
A:SER188
|
4.4
|
12.3
|
0.5
|
CB
|
A:LYS189
|
4.8
|
12.1
|
1.0
|
CG
|
A:ASP235
|
4.9
|
13.1
|
1.0
|
OG
|
A:SER186
|
4.9
|
18.4
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3mx3
Go back to
Chlorine Binding Sites List in 3mx3
Chlorine binding site 2 out
of 4 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl604
b:23.0
occ:1.00
|
O
|
A:HOH1107
|
3.0
|
25.1
|
1.0
|
N
|
A:PHE312
|
3.2
|
18.2
|
1.0
|
O
|
A:HOH826
|
3.3
|
16.6
|
1.0
|
CE
|
A:MSE74
|
3.5
|
24.2
|
0.5
|
CA
|
A:PRO311
|
3.7
|
18.0
|
1.0
|
C
|
A:PRO311
|
3.9
|
17.1
|
1.0
|
CB
|
A:PHE312
|
4.2
|
16.3
|
1.0
|
CA
|
A:PHE312
|
4.3
|
17.1
|
1.0
|
CB
|
A:PRO311
|
4.3
|
19.0
|
1.0
|
CG2
|
A:THR457
|
4.3
|
17.8
|
1.0
|
NH1
|
A:ARG459
|
4.3
|
28.7
|
0.5
|
SE
|
A:MSE74
|
4.3
|
24.0
|
0.4
|
CB
|
A:THR457
|
4.4
|
18.4
|
1.0
|
CE2
|
A:TYR79
|
4.5
|
18.3
|
1.0
|
CZ
|
A:TYR79
|
4.8
|
13.0
|
1.0
|
CA
|
A:THR457
|
4.9
|
17.3
|
1.0
|
NE
|
A:ARG459
|
4.9
|
26.3
|
0.5
|
N
|
A:PRO311
|
4.9
|
17.1
|
1.0
|
OH
|
A:TYR79
|
4.9
|
10.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3mx3
Go back to
Chlorine Binding Sites List in 3mx3
Chlorine binding site 3 out
of 4 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl606
b:28.9
occ:1.00
|
O
|
A:HOH662
|
2.9
|
11.0
|
1.0
|
N
|
A:TYR440
|
3.1
|
9.9
|
1.0
|
O
|
A:ASP61
|
3.2
|
9.8
|
1.0
|
CA
|
A:TYR437
|
3.4
|
9.3
|
1.0
|
CB
|
A:VAL439
|
3.6
|
11.7
|
1.0
|
C
|
A:TYR437
|
3.6
|
10.3
|
1.0
|
CB
|
A:ASP61
|
3.6
|
7.8
|
1.0
|
CB
|
A:TYR440
|
3.6
|
9.7
|
1.0
|
N
|
A:VAL439
|
3.7
|
11.1
|
1.0
|
CB
|
A:ALA65
|
3.8
|
8.9
|
1.0
|
O
|
A:TYR437
|
3.8
|
11.3
|
1.0
|
O
|
A:HOH1095
|
3.8
|
24.7
|
1.0
|
C
|
A:ASP61
|
3.8
|
8.2
|
1.0
|
N
|
A:TYR437
|
3.8
|
7.5
|
1.0
|
CA
|
A:VAL439
|
3.9
|
9.9
|
1.0
|
CA
|
A:TYR440
|
4.0
|
10.9
|
1.0
|
OD2
|
A:ASP61
|
4.0
|
9.5
|
1.0
|
C
|
A:VAL439
|
4.0
|
11.5
|
1.0
|
CA
|
A:ASP61
|
4.1
|
8.9
|
1.0
|
N
|
A:ASP438
|
4.2
|
10.9
|
1.0
|
CG
|
A:ASP61
|
4.3
|
11.1
|
1.0
|
CG2
|
A:VAL439
|
4.5
|
7.8
|
1.0
|
CG1
|
A:VAL439
|
4.5
|
8.6
|
1.0
|
C
|
A:ASP438
|
4.6
|
9.8
|
1.0
|
CB
|
A:TYR437
|
4.6
|
9.9
|
1.0
|
N
|
A:ALA65
|
4.8
|
7.3
|
1.0
|
N
|
A:GLU62
|
4.8
|
9.5
|
1.0
|
CA
|
A:ALA65
|
4.8
|
9.5
|
1.0
|
CD1
|
A:TYR437
|
4.9
|
10.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3mx3
Go back to
Chlorine Binding Sites List in 3mx3
Chlorine binding site 4 out
of 4 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl605
b:29.1
occ:1.00
|
OH
|
B:TYR241
|
3.1
|
12.7
|
1.0
|
SE
|
B:MSE239
|
3.2
|
15.5
|
0.2
|
N
|
B:SER52
|
3.3
|
11.3
|
1.0
|
O
|
B:SER52
|
3.5
|
18.6
|
1.0
|
CE1
|
B:TYR241
|
3.6
|
15.0
|
1.0
|
CZ
|
B:TYR241
|
3.8
|
10.6
|
1.0
|
CA
|
B:SER51
|
3.8
|
14.3
|
1.0
|
CB
|
B:SER51
|
4.0
|
16.3
|
1.0
|
C
|
B:SER51
|
4.0
|
13.1
|
1.0
|
O
|
B:HOH709
|
4.1
|
12.6
|
1.0
|
CA
|
B:SER52
|
4.2
|
13.2
|
1.0
|
C
|
B:SER52
|
4.3
|
14.6
|
1.0
|
CE
|
B:MSE239
|
4.5
|
16.1
|
0.7
|
CB
|
B:SER52
|
4.5
|
11.2
|
1.0
|
CG
|
B:MSE239
|
4.6
|
16.3
|
0.7
|
CE
|
B:MSE239
|
4.7
|
15.2
|
0.3
|
CG
|
B:MSE239
|
4.7
|
15.2
|
0.3
|
CG
|
B:PRO250
|
4.8
|
14.5
|
1.0
|
CD1
|
B:TYR241
|
4.8
|
19.0
|
1.0
|
O
|
B:THR50
|
4.9
|
16.3
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 00:25:43 2024
|