Chlorine in PDB 3n08: Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
Protein crystallography data
The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08
was solved by
J.S.Brunzelle,
Z.Wawrzak,
O.Onopriyenko,
A.Savchenko,
W.F.Anderson,
Centerfor Structural Genomics Of Infectious Diseases (Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.19 /
1.25
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.115,
37.847,
55.101,
105.44,
96.50,
108.36
|
R / Rfree (%)
|
15.2 /
17.3
|
Other elements in 3n08:
The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
(pdb code 3n08). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3n08
Go back to
Chlorine Binding Sites List in 3n08
Chlorine binding site 1 out
of 4 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl154
b:11.3
occ:1.00
|
H
|
A:CYS99
|
2.2
|
8.7
|
1.0
|
HH
|
A:TYR107
|
2.7
|
9.5
|
1.0
|
OH
|
A:TYR107
|
3.0
|
7.9
|
1.0
|
N
|
A:CYS99
|
3.1
|
7.3
|
1.0
|
HE1
|
A:HIS62
|
3.1
|
11.3
|
1.0
|
O
|
A:HOH448
|
3.2
|
14.5
|
1.0
|
HA
|
A:PRO98
|
3.2
|
8.3
|
1.0
|
O
|
A:HOH446
|
3.2
|
12.9
|
1.0
|
HE1
|
A:TYR107
|
3.3
|
7.4
|
1.0
|
HA
|
A:PRO100
|
3.3
|
8.4
|
1.0
|
O
|
A:HOH454
|
3.4
|
27.1
|
1.0
|
HE2
|
A:HIS62
|
3.4
|
12.7
|
1.0
|
C
|
A:CYS99
|
3.5
|
7.6
|
1.0
|
N
|
A:PRO100
|
3.5
|
7.2
|
1.0
|
HD3
|
A:PRO100
|
3.5
|
8.8
|
1.0
|
O
|
A:HOH458
|
3.6
|
29.2
|
1.0
|
OD2
|
A:ASP47
|
3.6
|
8.2
|
1.0
|
HD1
|
A:HIS105
|
3.7
|
8.4
|
1.0
|
CE1
|
A:HIS62
|
3.7
|
9.5
|
1.0
|
CA
|
A:CYS99
|
3.8
|
8.4
|
1.0
|
HB3
|
A:PRO100
|
3.8
|
9.0
|
1.0
|
NE2
|
A:HIS62
|
3.8
|
10.6
|
1.0
|
O
|
A:CYS99
|
3.8
|
9.9
|
1.0
|
CA
|
A:PRO100
|
3.9
|
7.1
|
1.0
|
CZ
|
A:TYR107
|
3.9
|
6.2
|
1.0
|
CE1
|
A:TYR107
|
3.9
|
6.2
|
1.0
|
CA
|
A:PRO98
|
4.0
|
6.9
|
1.0
|
C
|
A:PRO98
|
4.0
|
7.7
|
1.0
|
CD
|
A:PRO100
|
4.1
|
7.4
|
1.0
|
HB3
|
A:CYS99
|
4.2
|
11.8
|
1.0
|
ND1
|
A:HIS105
|
4.2
|
7.1
|
1.0
|
HE1
|
A:HIS105
|
4.3
|
8.7
|
1.0
|
CB
|
A:PRO100
|
4.3
|
7.6
|
1.0
|
HB3
|
A:PRO98
|
4.5
|
10.9
|
1.0
|
CB
|
A:CYS99
|
4.5
|
9.8
|
1.0
|
CE1
|
A:HIS105
|
4.5
|
7.2
|
1.0
|
HA
|
A:CYS99
|
4.7
|
10.1
|
1.0
|
O
|
A:PRO97
|
4.7
|
9.6
|
1.0
|
HD3
|
A:PRO101
|
4.7
|
11.2
|
1.0
|
HB2
|
A:CYS99
|
4.7
|
11.8
|
1.0
|
CG
|
A:ASP47
|
4.8
|
6.5
|
1.0
|
HD2
|
A:PRO100
|
4.8
|
8.8
|
1.0
|
CG
|
A:PRO100
|
4.8
|
7.5
|
1.0
|
CB
|
A:PRO98
|
4.8
|
9.2
|
1.0
|
ND1
|
A:HIS62
|
5.0
|
9.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3n08
Go back to
Chlorine Binding Sites List in 3n08
Chlorine binding site 2 out
of 4 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl155
b:11.4
occ:1.00
|
H
|
A:GLN6
|
2.4
|
10.1
|
0.5
|
H
|
A:GLN6
|
2.4
|
10.2
|
0.5
|
HG3
|
A:GLN6
|
2.7
|
29.1
|
0.5
|
HG
|
A:SER30
|
2.9
|
15.2
|
1.0
|
HB2
|
A:PRO28
|
2.9
|
9.6
|
1.0
|
HA
|
A:SER5
|
3.0
|
9.3
|
1.0
|
OG
|
A:SER30
|
3.0
|
12.7
|
1.0
|
HE22
|
A:GLN6
|
3.1
|
49.7
|
0.5
|
O
|
A:HOH197
|
3.2
|
12.9
|
1.0
|
HG2
|
A:GLN6
|
3.2
|
18.7
|
0.5
|
N
|
A:GLN6
|
3.2
|
8.5
|
0.5
|
N
|
A:GLN6
|
3.2
|
8.5
|
0.5
|
O
|
A:HOH207
|
3.3
|
15.3
|
1.0
|
NE2
|
A:GLN6
|
3.3
|
41.5
|
0.5
|
HB3
|
A:GLN6
|
3.4
|
18.1
|
0.5
|
CG
|
A:GLN6
|
3.4
|
24.3
|
0.5
|
CD
|
A:GLN6
|
3.5
|
39.1
|
0.5
|
C
|
A:LEU29
|
3.6
|
7.3
|
1.0
|
HA
|
A:LEU29
|
3.6
|
8.1
|
1.0
|
N
|
A:LEU29
|
3.7
|
6.9
|
1.0
|
C
|
A:PRO28
|
3.7
|
8.0
|
1.0
|
N
|
A:SER30
|
3.7
|
6.8
|
1.0
|
HE21
|
A:GLN6
|
3.7
|
49.7
|
0.5
|
HB2
|
A:GLN6
|
3.8
|
17.2
|
0.5
|
HB2
|
A:SER30
|
3.8
|
12.0
|
1.0
|
CA
|
A:SER5
|
3.8
|
7.8
|
1.0
|
CA
|
A:LEU29
|
3.8
|
6.8
|
1.0
|
CB
|
A:PRO28
|
3.8
|
8.0
|
1.0
|
H
|
A:SER30
|
3.9
|
8.1
|
1.0
|
CB
|
A:SER30
|
3.9
|
10.0
|
1.0
|
C
|
A:SER5
|
3.9
|
9.1
|
1.0
|
O
|
A:PRO28
|
3.9
|
7.4
|
1.0
|
CG
|
A:GLN6
|
3.9
|
15.6
|
0.5
|
O
|
A:LEU29
|
4.0
|
8.7
|
1.0
|
H
|
A:LEU29
|
4.0
|
8.2
|
1.0
|
CB
|
A:GLN6
|
4.0
|
15.2
|
0.5
|
CB
|
A:GLN6
|
4.0
|
14.4
|
0.5
|
HG2
|
A:PRO28
|
4.1
|
8.9
|
1.0
|
HG
|
A:SER5
|
4.1
|
9.3
|
1.0
|
CA
|
A:GLN6
|
4.2
|
10.3
|
0.5
|
OE1
|
A:GLN6
|
4.2
|
40.2
|
0.5
|
CA
|
A:GLN6
|
4.2
|
10.2
|
0.5
|
O
|
A:THR4
|
4.2
|
7.6
|
1.0
|
OE1
|
A:GLN6
|
4.2
|
41.2
|
0.5
|
HB2
|
A:ASN74
|
4.2
|
21.8
|
0.5
|
HG2
|
A:GLN6
|
4.3
|
29.1
|
0.5
|
CA
|
A:PRO28
|
4.4
|
7.1
|
1.0
|
CA
|
A:SER30
|
4.4
|
8.3
|
1.0
|
HB3
|
A:PRO28
|
4.5
|
9.6
|
1.0
|
CG
|
A:PRO28
|
4.5
|
7.5
|
1.0
|
HG1
|
A:THR4
|
4.5
|
11.8
|
1.0
|
CD
|
A:GLN6
|
4.6
|
35.5
|
0.5
|
N
|
A:SER5
|
4.6
|
7.6
|
1.0
|
HA
|
A:GLN6
|
4.6
|
12.2
|
0.5
|
HB2
|
A:ASN74
|
4.6
|
14.7
|
0.5
|
HA
|
A:GLN6
|
4.7
|
12.3
|
0.5
|
HA
|
A:SER30
|
4.7
|
9.9
|
1.0
|
C
|
A:THR4
|
4.7
|
7.3
|
1.0
|
O
|
A:HOH429
|
4.7
|
26.1
|
1.0
|
HG3
|
A:GLN6
|
4.7
|
18.7
|
0.5
|
HB3
|
A:SER30
|
4.8
|
12.0
|
1.0
|
OG
|
A:SER5
|
4.8
|
7.8
|
1.0
|
HA
|
A:PRO28
|
4.8
|
8.4
|
1.0
|
CB
|
A:SER5
|
4.9
|
7.8
|
1.0
|
HB2
|
A:GLN6
|
4.9
|
18.1
|
0.5
|
O
|
A:HOH173
|
4.9
|
23.2
|
1.0
|
H
|
A:ALA7
|
4.9
|
10.3
|
0.6
|
HG3
|
A:PRO28
|
4.9
|
8.9
|
1.0
|
HB3
|
A:GLN6
|
4.9
|
17.2
|
0.5
|
H
|
A:ALA7
|
5.0
|
10.3
|
0.4
|
|
Chlorine binding site 3 out
of 4 in 3n08
Go back to
Chlorine Binding Sites List in 3n08
Chlorine binding site 3 out
of 4 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl151
b:11.3
occ:1.00
|
H
|
B:CYS99
|
2.2
|
13.8
|
1.0
|
HE1
|
B:HIS62
|
3.0
|
14.2
|
1.0
|
OH
|
B:TYR107
|
3.0
|
9.2
|
1.0
|
N
|
B:CYS99
|
3.1
|
11.6
|
1.0
|
HA
|
B:PRO98
|
3.2
|
12.1
|
1.0
|
HH
|
B:TYR107
|
3.2
|
11.0
|
1.0
|
O
|
B:HOH445
|
3.2
|
12.2
|
1.0
|
HE1
|
B:TYR107
|
3.3
|
10.0
|
1.0
|
HA
|
B:PRO100
|
3.3
|
11.7
|
1.0
|
O
|
B:HOH447
|
3.3
|
13.1
|
1.0
|
HE2
|
B:HIS62
|
3.4
|
13.4
|
1.0
|
C
|
B:CYS99
|
3.5
|
11.0
|
1.0
|
N
|
B:PRO100
|
3.6
|
10.0
|
1.0
|
O
|
B:HOH508
|
3.6
|
26.1
|
1.0
|
CE1
|
B:HIS62
|
3.6
|
11.9
|
1.0
|
HD3
|
B:PRO100
|
3.6
|
13.7
|
1.0
|
OD2
|
B:ASP47
|
3.7
|
9.3
|
1.0
|
HD1
|
B:HIS105
|
3.7
|
11.7
|
1.0
|
O
|
B:CYS99
|
3.7
|
11.9
|
1.0
|
NE2
|
B:HIS62
|
3.8
|
11.2
|
1.0
|
CA
|
B:CYS99
|
3.8
|
10.8
|
1.0
|
CA
|
B:PRO100
|
3.9
|
9.8
|
1.0
|
CZ
|
B:TYR107
|
3.9
|
8.2
|
1.0
|
CE1
|
B:TYR107
|
3.9
|
8.4
|
1.0
|
HB3
|
B:PRO100
|
4.0
|
11.4
|
1.0
|
CA
|
B:PRO98
|
4.0
|
10.1
|
1.0
|
C
|
B:PRO98
|
4.0
|
11.2
|
1.0
|
CD
|
B:PRO100
|
4.1
|
11.4
|
1.0
|
ND1
|
B:HIS105
|
4.2
|
9.8
|
1.0
|
HB3
|
B:CYS99
|
4.3
|
14.1
|
1.0
|
HE1
|
B:HIS105
|
4.3
|
11.5
|
1.0
|
CB
|
B:PRO100
|
4.4
|
9.6
|
1.0
|
HB3
|
B:PRO98
|
4.5
|
13.4
|
1.0
|
HD3
|
B:PRO101
|
4.6
|
16.0
|
1.0
|
CE1
|
B:HIS105
|
4.6
|
9.6
|
1.0
|
CB
|
B:CYS99
|
4.6
|
11.8
|
1.0
|
HA
|
B:CYS99
|
4.6
|
12.8
|
1.0
|
O
|
B:PRO97
|
4.7
|
12.0
|
1.0
|
HD2
|
B:PRO101
|
4.8
|
16.0
|
1.0
|
ND1
|
B:HIS62
|
4.9
|
10.9
|
1.0
|
CG
|
B:ASP47
|
4.9
|
8.9
|
1.0
|
CB
|
B:PRO98
|
4.9
|
11.2
|
1.0
|
HB2
|
B:CYS99
|
4.9
|
14.1
|
1.0
|
HD2
|
B:PRO100
|
4.9
|
13.7
|
1.0
|
CG
|
B:PRO100
|
4.9
|
10.9
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3n08
Go back to
Chlorine Binding Sites List in 3n08
Chlorine binding site 4 out
of 4 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl152
b:14.7
occ:1.00
|
H
|
B:GLN6
|
2.3
|
12.8
|
1.0
|
HG3
|
B:GLN6
|
2.6
|
37.1
|
1.0
|
HG
|
B:SER30
|
2.7
|
22.2
|
1.0
|
HA
|
B:SER5
|
2.9
|
10.2
|
1.0
|
HB2
|
B:PRO28
|
2.9
|
13.9
|
1.0
|
OG
|
B:SER30
|
2.9
|
18.5
|
1.0
|
N
|
B:GLN6
|
3.1
|
10.7
|
1.0
|
CG
|
B:GLN6
|
3.3
|
31.0
|
1.0
|
O
|
B:HOH226
|
3.4
|
18.3
|
1.0
|
OD1
|
B:ASN74
|
3.4
|
31.8
|
0.6
|
CD
|
B:GLN6
|
3.4
|
46.3
|
1.0
|
HA
|
B:LEU29
|
3.5
|
9.4
|
1.0
|
OE1
|
B:GLN6
|
3.6
|
42.9
|
1.0
|
C
|
B:LEU29
|
3.6
|
9.6
|
1.0
|
HB2
|
B:GLN6
|
3.6
|
22.6
|
1.0
|
N
|
B:LEU29
|
3.7
|
8.8
|
1.0
|
CA
|
B:SER5
|
3.7
|
8.6
|
1.0
|
N
|
B:SER30
|
3.7
|
9.3
|
1.0
|
C
|
B:PRO28
|
3.7
|
8.1
|
1.0
|
CA
|
B:LEU29
|
3.8
|
7.8
|
1.0
|
H
|
B:SER30
|
3.8
|
11.2
|
1.0
|
CB
|
B:PRO28
|
3.9
|
11.6
|
1.0
|
CB
|
B:GLN6
|
3.9
|
18.9
|
1.0
|
C
|
B:SER5
|
3.9
|
10.6
|
1.0
|
O
|
B:PRO28
|
3.9
|
8.5
|
1.0
|
HB2
|
B:SER30
|
3.9
|
13.8
|
1.0
|
CB
|
B:SER30
|
3.9
|
11.5
|
1.0
|
HG
|
B:SER5
|
3.9
|
11.8
|
1.0
|
O
|
B:LEU29
|
4.0
|
10.7
|
1.0
|
H
|
B:LEU29
|
4.1
|
10.5
|
1.0
|
HG2
|
B:PRO28
|
4.1
|
15.9
|
1.0
|
CA
|
B:GLN6
|
4.1
|
12.3
|
1.0
|
NE2
|
B:GLN6
|
4.1
|
53.4
|
1.0
|
HG2
|
B:GLN6
|
4.1
|
37.1
|
1.0
|
O
|
B:THR4
|
4.1
|
8.8
|
1.0
|
CA
|
B:SER30
|
4.4
|
10.1
|
1.0
|
CA
|
B:PRO28
|
4.4
|
8.2
|
1.0
|
HE22
|
B:GLN6
|
4.4
|
64.0
|
1.0
|
HB3
|
B:PRO28
|
4.5
|
13.9
|
1.0
|
CG
|
B:PRO28
|
4.5
|
13.3
|
1.0
|
N
|
B:SER5
|
4.6
|
7.6
|
1.0
|
HE21
|
B:GLN6
|
4.6
|
64.0
|
1.0
|
OG
|
B:SER5
|
4.6
|
9.8
|
1.0
|
HA
|
B:GLN6
|
4.6
|
14.8
|
1.0
|
HA
|
B:SER30
|
4.6
|
12.1
|
1.0
|
HG1
|
B:THR4
|
4.6
|
14.4
|
1.0
|
CG
|
B:ASN74
|
4.6
|
32.5
|
0.6
|
C
|
B:THR4
|
4.7
|
7.7
|
1.0
|
CB
|
B:SER5
|
4.7
|
8.6
|
1.0
|
HB3
|
B:SER30
|
4.8
|
13.8
|
1.0
|
H
|
B:ALA7
|
4.8
|
12.9
|
1.0
|
OD1
|
B:ASN74
|
4.8
|
42.9
|
0.4
|
HB3
|
B:GLN6
|
4.8
|
22.6
|
1.0
|
HA
|
B:PRO28
|
4.8
|
9.8
|
1.0
|
O
|
B:HOH181
|
4.8
|
19.0
|
1.0
|
HB2
|
B:SER5
|
4.9
|
10.3
|
1.0
|
HG3
|
B:PRO28
|
4.9
|
15.9
|
1.0
|
|
Reference:
J.S.Brunzelle,
Z.Wawrzak,
O.Onopriyenko,
A.Savchenko,
W.F.Anderson,
Center For Structural Genomics Of Infectious Diseases(Csgid).
1.25 Angstrom Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx To Be Published.
Page generated: Sun Jul 21 00:30:10 2024
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