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Chlorine in PDB 3n2b: 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.

Enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.

All present enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.:
4.1.1.20;

Protein crystallography data

The structure of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae., PDB code: 3n2b was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.94 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.394, 80.329, 118.693, 105.31, 93.62, 90.52
R / Rfree (%) 18.3 / 21.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. (pdb code 3n2b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae., PDB code: 3n2b:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3n2b

Go back to Chlorine Binding Sites List in 3n2b
Chlorine binding site 1 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl418

b:44.6
occ:1.00
 N A:GLU128 3.3 29.1 1.0
O B:HOH948 3.3 40.2 1.0
NH1 A:ARG178 3.4 47.6 0.4
CG B:LYS295 3.5 46.5 1.0
CD B:LYS295 3.5 53.0 1.0
NH2 A:ARG178 3.6 42.4 0.6
NH1 A:ARG178 3.7 46.6 0.6
CA A:SER127 3.8 29.6 1.0
O B:HOH763 3.8 54.4 1.0
CB A:SER127 3.9 29.8 1.0
CD A:PRO129 4.0 28.5 1.0
C A:SER127 4.1 28.4 1.0
CZ A:ARG178 4.1 44.0 0.6
CB A:GLU128 4.2 33.8 1.0
CG A:GLU128 4.2 41.3 1.0
CA A:GLU128 4.3 31.3 1.0
CZ A:ARG178 4.6 48.2 0.4
CB B:LYS295 4.7 39.1 1.0
CG1 A:ILE174 4.7 36.8 1.0
CE B:LYS295 4.8 53.9 1.0
NZ B:LYS295 5.0 50.6 1.0
NH2 A:ARG178 5.0 51.1 0.4
OG A:SER127 5.0 29.7 1.0

Chlorine binding site 2 out of 4 in 3n2b

Go back to Chlorine Binding Sites List in 3n2b
Chlorine binding site 2 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl418

b:38.1
occ:1.00
 O C:HOH992 3.1 47.3 1.0
N C:GLY277 3.2 31.0 1.0
N C:ALA279 3.4 34.1 1.0
N C:ARG278 3.6 33.4 1.0
CA C:PRO276 3.7 31.5 1.0
CB C:ALA279 3.7 33.1 1.0
N C:GLY240 3.7 47.7 1.0
O C:HOH429 3.9 27.4 1.0
C C:PRO276 4.0 30.3 1.0
C C:GLY277 4.1 31.8 1.0
CB C:ARG278 4.2 37.1 1.0
CA C:ALA279 4.2 34.7 1.0
CA C:GLY277 4.2 31.3 1.0
CA C:ARG278 4.2 35.8 1.0
CB C:PRO276 4.2 31.6 1.0
C C:ARG278 4.3 35.1 1.0
O C:HOH470 4.4 38.7 1.0
CA C:GLY240 4.4 50.2 1.0
CA C:GLY239 4.6 41.3 1.0
C C:GLY239 4.7 44.4 1.0
O C:GLU275 4.8 31.8 1.0
N C:PRO276 4.9 32.1 1.0
O C:GLY277 5.0 30.8 1.0
CG C:ARG278 5.0 44.6 1.0
O C:HOH1077 5.0 33.8 0.5

Chlorine binding site 3 out of 4 in 3n2b

Go back to Chlorine Binding Sites List in 3n2b
Chlorine binding site 3 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl419

b:43.9
occ:1.00
 O C:HOH527 3.3 44.9 1.0
N C:ILE163 3.4 34.4 1.0
N C:TYR162 3.4 32.2 1.0
C C:HIS160 3.4 35.6 1.0
CA C:HIS160 3.5 36.7 1.0
N C:PRO161 3.7 35.2 1.0
CB C:TYR162 3.7 33.2 1.0
CG1 C:ILE163 3.7 37.4 1.0
O C:HIS160 3.8 31.9 1.0
CD1 C:ILE163 3.9 39.0 1.0
CD C:PRO161 3.9 36.0 1.0
CB C:HIS160 3.9 37.1 1.0
CA C:TYR162 3.9 32.8 1.0
CB C:ILE163 4.1 36.4 1.0
C C:TYR162 4.1 32.6 1.0
C C:PRO161 4.2 33.0 1.0
CA C:ILE163 4.3 35.3 1.0
CA C:PRO161 4.5 34.4 1.0
CG C:PRO161 4.6 35.5 1.0
ND1 C:HIS160 4.7 41.3 1.0
N C:HIS160 4.8 38.4 1.0
CG C:HIS160 4.8 37.8 1.0
O C:THR159 4.8 38.5 1.0
CG C:TYR162 4.9 33.6 1.0

Chlorine binding site 4 out of 4 in 3n2b

Go back to Chlorine Binding Sites List in 3n2b
Chlorine binding site 4 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl418

b:42.4
occ:1.00
 O D:HOH1079 2.9 64.2 1.0
O D:HOH545 3.1 44.7 1.0
N D:GLY277 3.1 30.8 1.0
N D:ALA279 3.3 36.1 1.0
N D:ARG278 3.5 33.5 1.0
N D:GLY240 3.7 56.5 1.0
CB D:ALA279 3.7 36.7 1.0
CA D:PRO276 3.7 32.5 1.0
C D:PRO276 3.9 31.5 1.0
O D:HOH437 4.0 33.3 1.0
C D:GLY277 4.0 32.2 1.0
CA D:GLY277 4.1 30.4 1.0
CA D:ALA279 4.1 35.6 1.0
CB D:PRO276 4.2 32.9 1.0
CB D:ARG278 4.2 37.9 1.0
CA D:ARG278 4.2 35.8 1.0
C D:ARG278 4.2 36.4 1.0
O D:HOH1050 4.3 49.8 1.0
CA D:GLY240 4.4 58.5 1.0
CA D:GLY239 4.6 49.0 1.0
C D:GLY239 4.6 52.3 1.0
O D:GLU275 4.8 33.0 1.0
O D:GLY277 4.9 31.3 1.0
CG D:ARG278 4.9 40.7 1.0
N D:PRO276 5.0 31.6 1.0
N D:LEU241 5.0 62.2 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. To Be Published.
Page generated: Sun Jul 21 00:31:51 2024

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