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Chlorine in PDB 3nd0: X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter

Protein crystallography data

The structure of X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter, PDB code: 3nd0 was solved by H.Jayaram, J.Robertson, F.Wu, C.Williams, C.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.22 / 3.20
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 203.790, 203.790, 96.820, 90.00, 90.00, 120.00
R / Rfree (%) 24.3 / 26.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter (pdb code 3nd0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter, PDB code: 3nd0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3nd0

Go back to Chlorine Binding Sites List in 3nd0
Chlorine binding site 1 out of 2 in the X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl467

b:79.1
occ:1.00
OG A:SER103 2.8 91.1 1.0
OH A:TYR437 2.8 81.0 1.0
N A:ILE348 3.1 62.7 1.0
CG2 A:ILE348 3.7 60.3 1.0
N A:PHE349 3.7 68.8 1.0
CG A:GLU144 3.7 89.0 1.0
CB A:SER103 3.8 89.8 1.0
CD1 A:ILE105 3.8 64.2 1.0
CA A:GLY347 3.9 77.9 1.0
C A:GLY347 4.0 77.8 1.0
CZ A:TYR437 4.0 78.5 1.0
CD2 A:PHE349 4.0 74.0 1.0
CA A:ILE348 4.0 61.7 1.0
OE2 A:GLU144 4.1 95.5 1.0
CB A:ILE348 4.3 61.1 1.0
C A:ILE348 4.3 61.5 1.0
CE1 A:TYR437 4.4 74.4 1.0
CB A:PHE349 4.4 69.2 1.0
CD A:GLU144 4.4 93.7 1.0
CA A:SER103 4.5 90.0 1.0
O A:GLU144 4.6 87.8 1.0
CA A:PHE349 4.6 68.5 1.0
CG A:PHE349 4.7 71.8 1.0
C A:GLU144 4.7 86.3 1.0
N A:GLY145 4.8 77.5 1.0
CA A:GLY145 4.8 75.1 1.0
CB A:GLU144 4.9 86.3 1.0
CE2 A:PHE349 4.9 75.1 1.0
CG1 A:ILE105 5.0 63.0 1.0

Chlorine binding site 2 out of 2 in 3nd0

Go back to Chlorine Binding Sites List in 3nd0
Chlorine binding site 2 out of 2 in the X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of A Slow Cyanobacterial Cl-/H+ Antiporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl467

b:88.6
occ:1.00
OH B:TYR437 2.9 69.5 1.0
OG B:SER103 3.0 87.1 1.0
N B:ILE348 3.3 80.8 1.0
CG B:GLU144 3.5 76.6 1.0
CD1 B:ILE105 3.6 74.4 1.0
CD2 B:PHE349 3.7 73.7 1.0
N B:PHE349 3.7 68.8 1.0
CA B:GLY347 3.9 61.7 1.0
C B:GLY347 4.0 61.6 1.0
CB B:SER103 4.0 85.8 1.0
CZ B:TYR437 4.0 67.0 1.0
OE2 B:GLU144 4.1 83.2 1.0
CG2 B:ILE348 4.2 78.4 1.0
CB B:PHE349 4.2 68.7 1.0
CA B:ILE348 4.3 79.9 1.0
CD B:GLU144 4.4 80.9 1.0
CG B:PHE349 4.4 71.6 1.0
N B:GLY145 4.5 88.4 1.0
CE1 B:TYR437 4.5 63.5 1.0
C B:ILE348 4.5 80.0 1.0
CA B:GLY145 4.5 85.7 1.0
CA B:PHE349 4.5 68.2 1.0
CA B:SER103 4.6 86.0 1.0
CE2 B:PHE349 4.6 74.5 1.0
CB B:GLU144 4.7 73.9 1.0
CB B:ILE348 4.7 79.5 1.0
C B:GLU144 4.7 73.9 1.0
CG1 B:ILE105 4.8 73.3 1.0
O B:GLU144 4.9 75.3 1.0

Reference:

H.Jayaram, J.L.Robertson, F.Wu, C.Williams, C.Miller. Structure of A Slow Clc Cl(-)/H(+) Antiporter From A Cyanobacterium. Biochemistry V. 50 788 2011.
ISSN: ISSN 0006-2960
PubMed: 21174448
DOI: 10.1021/BI1019258
Page generated: Sat Dec 12 09:57:26 2020

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