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Chlorine in PDB 3nja: The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472.

Protein crystallography data

The structure of The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472., PDB code: 3nja was solved by K.Tan, R.Wu, B.Feldmann, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.00 / 2.37
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.570, 65.527, 123.423, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 29.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472. (pdb code 3nja). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472., PDB code: 3nja:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3nja

Go back to Chlorine Binding Sites List in 3nja
Chlorine binding site 1 out of 2 in the The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl124

b:70.3
occ:0.50
NH1 C:ARG75 3.3 67.9 0.5
NH2 C:ARG75 3.3 67.0 0.5
CZ C:ARG75 3.7 66.6 0.5
NE2 C:HIS70 3.7 65.2 1.0
CD2 C:HIS70 4.5 61.8 1.0
NH2 C:ARG75 4.7 41.6 0.5
CE1 C:HIS70 4.7 65.0 1.0
CB D:PHE77 4.9 49.1 1.0
NE C:ARG75 4.9 68.7 0.5

Chlorine binding site 2 out of 2 in 3nja

Go back to Chlorine Binding Sites List in 3nja
Chlorine binding site 2 out of 2 in the The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl125

b:61.7
occ:0.50
NH1 D:ARG75 2.7 62.8 0.6
NH2 D:ARG75 3.3 49.6 0.6
CZ D:ARG75 3.3 66.5 0.6
NE2 D:HIS70 3.6 91.2 1.0
CD2 D:HIS70 4.3 90.3 1.0
NE D:ARG75 4.6 72.9 0.6
CE1 D:HIS70 4.6 88.4 1.0
NH2 D:ARG75 4.7 34.9 0.4
O C:HOH129 4.8 47.2 1.0

Reference:

K.Tan, R.Wu, B.Feldmann, A.Joachimiak. The Crystal Structure of the Pas Domain of A Ggdef Family Protein From Chromobacterium Violaceum Atcc 12472. To Be Published.
Page generated: Sat Dec 12 09:57:40 2020

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