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Chlorine in PDB 3npy: Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4

Enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4

All present enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4:
1.14.18.1;

Protein crystallography data

The structure of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4, PDB code: 3npy was solved by M.Sendovski, M.Kanteev, N.Adir, A.Fishman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.550, 82.130, 146.720, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 27.5

Other elements in 3npy:

The structure of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 also contains other interesting chemical elements:

Copper (Cu) 8 atoms
Zinc (Zn) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 (pdb code 3npy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4, PDB code: 3npy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 1 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:34.4
occ:1.00
 ZN A:ZN505 2.2 34.4 1.0
OD1 A:ASP287 3.0 34.4 1.0
CG A:ASP287 3.4 34.4 1.0
CB A:ASP287 3.4 34.4 1.0
CL A:CL511 3.6 31.4 0.7
ND1 A:HIS13 3.7 29.3 1.0
CG2 A:ILE288 3.8 84.2 1.0
CE1 A:HIS13 4.0 28.3 1.0
OD2 A:ASP287 4.4 34.4 1.0
C A:ASP287 4.4 38.8 1.0
CA A:ASP287 4.6 38.8 1.0
N A:ILE288 4.6 54.6 1.0
O A:ASP287 4.8 38.8 1.0
CG A:HIS13 4.9 28.7 1.0

Chlorine binding site 2 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 2 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:31.4
occ:0.70
 ZN A:ZN505 1.8 34.4 1.0
CB A:HIS13 3.5 29.0 1.0
CL A:CL510 3.6 34.4 1.0
CG A:LYS9 3.6 33.5 1.0
CD A:LYS9 3.6 36.5 1.0
ND1 A:HIS13 3.7 29.3 1.0
OD1 A:ASP287 3.9 34.4 1.0
CE A:LYS9 4.0 38.8 1.0
CG A:HIS13 4.0 28.7 1.0
CB A:ASP287 4.1 34.4 1.0
CB A:LYS9 4.1 32.9 1.0
CG A:ASP287 4.5 34.4 1.0
CA A:HIS13 4.8 36.7 1.0
O A:HIS13 4.8 37.3 1.0
CA A:LYS9 4.8 42.5 1.0
CE1 A:HIS13 4.9 28.3 1.0
NZ A:LYS9 4.9 41.5 1.0

Chlorine binding site 3 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 3 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl513

b:31.1
occ:0.50
 ZN A:ZN506 2.6 34.4 0.5
CE1 A:HIS49 3.0 40.3 1.0
NE2 A:HIS49 3.3 41.2 1.0
CL B:CL512 3.4 31.1 0.5
O A:GLY46 3.8 30.3 1.0
O A:HOH323 4.0 47.1 1.0
ND1 A:HIS49 4.3 38.2 1.0
CD2 A:HIS49 4.6 40.1 1.0
CA A:LYS47 4.8 30.5 1.0
C A:GLY46 4.9 28.8 1.0

Chlorine binding site 4 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 4 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl512

b:31.1
occ:0.50
 OD1 B:ASN144 2.4 50.9 1.0
ZN A:ZN506 2.4 34.4 0.5
NE2 A:HIS49 3.2 41.2 1.0
CG B:ASN144 3.2 51.2 1.0
ND2 B:ASN144 3.4 51.7 1.0
CL A:CL513 3.4 31.1 0.5
CE1 A:HIS49 3.8 40.3 1.0
CD2 A:HIS49 4.2 40.1 1.0
CB B:ASN144 4.6 49.4 1.0
O B:GLN142 4.7 58.2 1.0
O A:HOH351 4.9 34.4 1.0
ND1 A:HIS49 4.9 38.2 1.0

Chlorine binding site 5 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 5 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl508

b:34.4
occ:1.00
 ZN B:ZN505 2.1 34.4 1.0
OD2 B:ASP287 2.8 68.1 1.0
CD B:LYS9 3.3 35.1 1.0
CG B:ASP287 3.3 68.1 1.0
CG B:LYS9 3.4 32.1 1.0
CB B:HIS13 3.4 36.0 1.0
OD1 B:ASP287 3.4 68.1 1.0
CE B:LYS9 3.6 37.4 1.0
CL B:CL509 3.6 34.4 1.0
ND1 B:HIS13 3.6 36.3 1.0
CG B:HIS13 3.9 35.7 1.0
CB B:LYS9 4.0 31.5 1.0
O B:HIS13 4.5 34.9 1.0
NZ B:LYS9 4.5 40.1 1.0
CB B:ASP287 4.6 68.1 1.0
CA B:HIS13 4.7 34.3 1.0
C B:HIS13 4.8 35.3 1.0
CA B:LYS9 4.9 33.3 1.0
CE1 B:HIS13 4.9 35.3 1.0

Chlorine binding site 6 out of 6 in 3npy

Go back to Chlorine Binding Sites List in 3npy
Chlorine binding site 6 out of 6 in the Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Tyrosinase From Bacillus Megaterium Soaked in CUSO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl509

b:34.4
occ:1.00
 ZN B:ZN505 2.1 34.4 1.0
ND1 B:HIS13 3.1 36.3 1.0
CE1 B:HIS13 3.4 35.3 1.0
CB B:ASP287 3.6 68.1 1.0
CL B:CL508 3.6 34.4 1.0
CD1 B:ILE288 3.7 48.9 1.0
CG B:ASP287 3.7 68.1 1.0
OD2 B:ASP287 3.7 68.1 1.0
CG1 B:ILE288 4.0 57.8 1.0
O B:ASP287 4.2 96.7 1.0
OD1 B:ASP287 4.3 68.1 1.0
CG B:HIS13 4.4 35.7 1.0
C B:ASP287 4.4 96.7 1.0
CA B:ASP287 4.4 96.7 1.0
NE2 B:HIS13 4.6 36.4 1.0

Reference:

M.Sendovski, M.Kanteev, V.Shuster Ben-Yosef, N.Adir, A.Fishman. First Structures of An Active Bacterial Tyrosinase Reveal Copper Plasticity. J.Mol.Biol. V. 405 227 2011.
ISSN: ISSN 0022-2836
PubMed: 21040728
DOI: 10.1016/J.JMB.2010.10.048
Page generated: Sun Jul 21 01:08:08 2024

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