Chlorine in PDB 3nw8: Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH

The structure of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH, PDB code: 3nw8 was solved by S.D.Stampfer, H.Lou, G.H.Cohen, R.J.Eisenberg, E.E.Heldwein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.69 / 2.76
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	117.985, 117.985, 321.537, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 24.2

The structure of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Chlorine atom in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH (pdb code 3nw8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH, PDB code: 3nw8:

Chlorine binding site 1 out of 1 in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl5 b:71.6 occ:1.00 O A:HOH758 3.1 30.1 1.0 N A:THR312 3.2 30.7 1.0 O A:THR312 3.2 30.7 1.0 CG2 A:THR312 3.5 30.7 1.0 O A:GLU310 3.8 53.7 1.0 CA A:HIS311 3.9 44.7 1.0 C A:HIS311 4.0 44.7 1.0 C A:THR312 4.0 30.7 1.0 CA A:THR312 4.0 30.7 1.0 ND1 A:HIS311 4.1 44.7 1.0 CB A:THR312 4.4 30.7 1.0 CG A:HIS311 4.6 44.7 1.0 C A:GLU310 4.7 53.7 1.0 CB A:HIS311 4.7 44.7 1.0 CE1 A:HIS311 4.7 44.7 1.0 N A:HIS311 4.8 44.7 1.0

S.D.Stampfer, H.Lou, G.H.Cohen, R.J.Eisenberg, E.E.Heldwein. Structural Basis of Local, pH-Dependent Conformational Changes in Glycoprotein B From Herpes Simplex Virus Type 1. J.Virol. V. 84 12924 2010.
ISSN: ISSN 0022-538X
PubMed: 20943984
DOI: 10.1128/JVI.01750-10