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Chlorine in PDB 3nw8: Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH

Protein crystallography data

The structure of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH, PDB code: 3nw8 was solved by S.D.Stampfer, H.Lou, G.H.Cohen, R.J.Eisenberg, E.E.Heldwein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.69 / 2.76
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 117.985, 117.985, 321.537, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 24.2

Other elements in 3nw8:

The structure of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH (pdb code 3nw8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH, PDB code: 3nw8:

Chlorine binding site 1 out of 1 in 3nw8

Go back to Chlorine Binding Sites List in 3nw8
Chlorine binding site 1 out of 1 in the Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glycoprotein B From Herpes Simplex Virus Type 1, Y179S Mutant, High-pH within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5

b:71.6
occ:1.00
O A:HOH758 3.1 30.1 1.0
N A:THR312 3.2 30.7 1.0
O A:THR312 3.2 30.7 1.0
CG2 A:THR312 3.5 30.7 1.0
O A:GLU310 3.8 53.7 1.0
CA A:HIS311 3.9 44.7 1.0
C A:HIS311 4.0 44.7 1.0
C A:THR312 4.0 30.7 1.0
CA A:THR312 4.0 30.7 1.0
ND1 A:HIS311 4.1 44.7 1.0
CB A:THR312 4.4 30.7 1.0
CG A:HIS311 4.6 44.7 1.0
C A:GLU310 4.7 53.7 1.0
CB A:HIS311 4.7 44.7 1.0
CE1 A:HIS311 4.7 44.7 1.0
N A:HIS311 4.8 44.7 1.0

Reference:

S.D.Stampfer, H.Lou, G.H.Cohen, R.J.Eisenberg, E.E.Heldwein. Structural Basis of Local, pH-Dependent Conformational Changes in Glycoprotein B From Herpes Simplex Virus Type 1. J.Virol. V. 84 12924 2010.
ISSN: ISSN 0022-538X
PubMed: 20943984
DOI: 10.1128/JVI.01750-10
Page generated: Sat Dec 12 09:58:31 2020

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