Chlorine in PDB 3nwb: Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
Enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
All present enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group:
2.1.1.6;
Protein crystallography data
The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb
was solved by
A.Ehler,
D.Schlatter,
M.Stihle,
J.Benz,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
23.42 /
1.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.389,
55.351,
79.356,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.2 /
16.4
|
Other elements in 3nwb:
The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
(pdb code 3nwb). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 3nwb
Go back to
Chlorine Binding Sites List in 3nwb
Chlorine binding site 1 out
of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl223
b:16.1
occ:1.00
|
H
|
A:SER72
|
2.6
|
17.6
|
0.5
|
H
|
A:SER72
|
2.6
|
17.6
|
0.5
|
H
|
A:VAL42
|
2.6
|
15.7
|
0.5
|
H
|
A:VAL42
|
2.6
|
15.7
|
0.5
|
HB3
|
A:TYR71
|
2.8
|
16.9
|
1.0
|
HA
|
A:ASN41
|
2.8
|
16.4
|
1.0
|
HG13
|
A:VAL42
|
2.8
|
18.4
|
0.5
|
HB3
|
A:SER72
|
3.1
|
19.4
|
0.5
|
O
|
A:HOH275
|
3.1
|
22.3
|
1.0
|
O
|
A:HOH236
|
3.1
|
15.3
|
1.0
|
HG
|
A:SER72
|
3.2
|
21.1
|
0.5
|
OG
|
A:SER72
|
3.2
|
17.6
|
0.5
|
HB2
|
A:SER72
|
3.3
|
19.7
|
0.5
|
N
|
A:SER72
|
3.3
|
14.7
|
1.0
|
N
|
A:VAL42
|
3.4
|
13.1
|
1.0
|
HG12
|
A:VAL42
|
3.4
|
21.2
|
0.5
|
HD1
|
A:TYR71
|
3.5
|
16.8
|
1.0
|
OG
|
A:SER72
|
3.5
|
17.1
|
0.5
|
HD21
|
A:ASN41
|
3.6
|
20.9
|
1.0
|
CA
|
A:ASN41
|
3.6
|
13.7
|
1.0
|
CB
|
A:SER72
|
3.7
|
16.1
|
0.5
|
CB
|
A:SER72
|
3.7
|
16.4
|
0.5
|
HG
|
A:SER72
|
3.7
|
20.5
|
0.5
|
HB3
|
A:ASN41
|
3.7
|
19.1
|
1.0
|
CB
|
A:TYR71
|
3.7
|
14.1
|
1.0
|
CG1
|
A:VAL42
|
3.8
|
15.4
|
0.5
|
HB
|
A:VAL42
|
3.8
|
18.3
|
0.5
|
H
|
A:TYR71
|
3.9
|
16.4
|
1.0
|
C
|
A:ASN41
|
4.0
|
13.2
|
1.0
|
HG22
|
A:VAL42
|
4.0
|
21.5
|
0.5
|
CA
|
A:SER72
|
4.1
|
15.0
|
0.5
|
CA
|
A:SER72
|
4.1
|
15.1
|
0.5
|
OD2
|
A:ASP141
|
4.1
|
13.0
|
1.0
|
HB3
|
A:TYR68
|
4.1
|
17.5
|
1.0
|
CB
|
A:ASN41
|
4.2
|
15.9
|
1.0
|
HG12
|
A:VAL42
|
4.2
|
18.4
|
0.5
|
O
|
A:HOH242
|
4.2
|
19.7
|
1.0
|
CD1
|
A:TYR71
|
4.2
|
14.0
|
1.0
|
C
|
A:TYR71
|
4.2
|
14.8
|
1.0
|
CG1
|
A:VAL42
|
4.2
|
17.7
|
0.5
|
HG11
|
A:VAL42
|
4.2
|
18.4
|
0.5
|
HB2
|
A:TYR71
|
4.3
|
16.9
|
1.0
|
N
|
A:TYR71
|
4.3
|
13.6
|
1.0
|
CA
|
A:TYR71
|
4.3
|
15.0
|
1.0
|
O
|
A:ALA67
|
4.3
|
15.2
|
1.0
|
CB
|
A:VAL42
|
4.3
|
15.3
|
0.5
|
O
|
A:HOH336
|
4.4
|
12.6
|
1.0
|
ND2
|
A:ASN41
|
4.4
|
17.4
|
1.0
|
HD2
|
A:TYR68
|
4.4
|
18.4
|
1.0
|
CG
|
A:TYR71
|
4.4
|
13.8
|
1.0
|
CA
|
A:VAL42
|
4.5
|
13.1
|
0.5
|
HA
|
A:SER72
|
4.5
|
18.1
|
0.5
|
HA
|
A:SER72
|
4.5
|
18.0
|
0.5
|
CA
|
A:VAL42
|
4.5
|
13.2
|
0.5
|
O
|
A:MET40
|
4.5
|
14.1
|
1.0
|
CB
|
A:VAL42
|
4.5
|
15.6
|
0.5
|
HB2
|
A:SER72
|
4.5
|
19.4
|
0.5
|
HB3
|
A:SER72
|
4.6
|
19.7
|
0.5
|
HG11
|
A:VAL42
|
4.6
|
21.2
|
0.5
|
CG2
|
A:VAL42
|
4.7
|
17.9
|
0.5
|
HE2
|
A:PHE139
|
4.7
|
18.1
|
1.0
|
N
|
A:ASN41
|
4.8
|
13.4
|
1.0
|
H
|
A:GLY70
|
4.8
|
17.9
|
1.0
|
CG
|
A:ASN41
|
4.8
|
17.6
|
1.0
|
HA
|
A:VAL42
|
4.9
|
15.8
|
0.5
|
HA
|
A:VAL42
|
4.9
|
15.9
|
0.5
|
H
|
A:CYS69
|
4.9
|
17.8
|
1.0
|
HB2
|
A:ASN41
|
5.0
|
19.1
|
1.0
|
HG13
|
A:VAL42
|
5.0
|
21.2
|
0.5
|
|
Chlorine binding site 2 out
of 3 in 3nwb
Go back to
Chlorine Binding Sites List in 3nwb
Chlorine binding site 2 out
of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl224
b:18.7
occ:1.00
|
H
|
A:TYR200
|
2.5
|
15.7
|
1.0
|
H
|
A:ALA45
|
2.7
|
18.5
|
1.0
|
H
|
A:ASP44
|
2.8
|
17.8
|
1.0
|
O
|
A:HOH348
|
3.1
|
34.6
|
1.0
|
HA
|
A:GLU199
|
3.1
|
14.2
|
1.0
|
O
|
A:HOH269
|
3.2
|
21.8
|
1.0
|
N
|
A:TYR200
|
3.3
|
13.1
|
1.0
|
N
|
A:ASP44
|
3.4
|
14.8
|
1.0
|
HB3
|
A:ASP44
|
3.4
|
22.6
|
1.0
|
N
|
A:ALA45
|
3.5
|
15.4
|
1.0
|
HA3
|
A:GLY43
|
3.5
|
16.3
|
1.0
|
HA
|
A:TYR200
|
3.7
|
16.6
|
1.0
|
HB2
|
A:ALA45
|
3.7
|
20.1
|
1.0
|
O
|
A:HOH234
|
3.7
|
13.5
|
1.0
|
HD1
|
A:TYR200
|
3.7
|
20.0
|
1.0
|
HB3
|
A:ALA45
|
3.8
|
20.1
|
1.0
|
CA
|
A:GLU199
|
4.0
|
11.8
|
1.0
|
CD1
|
A:TYR200
|
4.0
|
16.7
|
1.0
|
CA
|
A:ASP44
|
4.1
|
15.4
|
1.0
|
CA
|
A:TYR200
|
4.1
|
13.8
|
1.0
|
CB
|
A:ALA45
|
4.1
|
16.7
|
1.0
|
C
|
A:GLY43
|
4.1
|
13.7
|
1.0
|
CB
|
A:ASP44
|
4.2
|
18.8
|
1.0
|
C
|
A:GLU199
|
4.2
|
11.4
|
1.0
|
CA
|
A:GLY43
|
4.2
|
13.6
|
1.0
|
C
|
A:ASP44
|
4.3
|
14.8
|
1.0
|
HE1
|
A:TYR200
|
4.3
|
21.4
|
1.0
|
HA2
|
A:GLY43
|
4.3
|
16.3
|
1.0
|
CE1
|
A:TYR200
|
4.3
|
17.8
|
1.0
|
CA
|
A:ALA45
|
4.4
|
14.9
|
1.0
|
HB2
|
A:ASP44
|
4.5
|
22.6
|
1.0
|
HB2
|
A:GLU199
|
4.5
|
14.6
|
1.0
|
CG
|
A:TYR200
|
4.7
|
15.4
|
1.0
|
O
|
A:LEU198
|
4.7
|
12.0
|
1.0
|
O
|
A:HOH423
|
4.7
|
46.8
|
1.0
|
H
|
A:MET201
|
4.7
|
15.8
|
0.8
|
H
|
A:MET201
|
4.7
|
15.8
|
0.2
|
CB
|
A:GLU199
|
4.8
|
12.2
|
1.0
|
HB3
|
A:GLU199
|
4.8
|
14.6
|
1.0
|
H
|
A:LYS46
|
4.9
|
14.8
|
1.0
|
O
|
A:HOH295
|
4.9
|
31.2
|
1.0
|
O
|
A:HOH350
|
5.0
|
30.7
|
1.0
|
HA
|
A:ALA45
|
5.0
|
17.9
|
1.0
|
N
|
A:GLU199
|
5.0
|
11.7
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 3nwb
Go back to
Chlorine Binding Sites List in 3nwb
Chlorine binding site 3 out
of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl225
b:61.8
occ:1.00
|
H
|
A:GLY83
|
2.8
|
43.9
|
1.0
|
HH22
|
A:ARG85
|
2.9
|
40.9
|
1.0
|
HH12
|
A:ARG85
|
3.0
|
39.2
|
1.0
|
N
|
A:GLY83
|
3.6
|
36.6
|
1.0
|
HZ3
|
A:LYS111
|
3.6
|
41.4
|
1.0
|
HA
|
A:PRO82
|
3.7
|
46.2
|
1.0
|
NH2
|
A:ARG85
|
3.7
|
34.0
|
1.0
|
NH1
|
A:ARG85
|
3.8
|
32.6
|
1.0
|
HA2
|
A:GLY83
|
3.9
|
41.9
|
1.0
|
HB3
|
A:PRO82
|
4.0
|
47.2
|
1.0
|
HZ1
|
A:LYS111
|
4.1
|
41.4
|
1.0
|
NZ
|
A:LYS111
|
4.3
|
34.5
|
1.0
|
CZ
|
A:ARG85
|
4.3
|
32.1
|
1.0
|
CA
|
A:GLY83
|
4.3
|
34.9
|
1.0
|
CA
|
A:PRO82
|
4.4
|
38.5
|
1.0
|
HH21
|
A:ARG85
|
4.4
|
40.9
|
1.0
|
C
|
A:PRO82
|
4.4
|
38.4
|
1.0
|
HH11
|
A:ARG85
|
4.5
|
39.2
|
1.0
|
HG2
|
A:LYS111
|
4.6
|
32.5
|
1.0
|
CB
|
A:PRO82
|
4.7
|
39.3
|
1.0
|
HE2
|
A:LYS111
|
4.8
|
39.0
|
1.0
|
HZ2
|
A:LYS111
|
4.9
|
41.4
|
1.0
|
HA3
|
A:GLY83
|
4.9
|
41.9
|
1.0
|
HG3
|
A:LYS111
|
5.0
|
32.5
|
1.0
|
|
Reference:
M.Ellermann,
C.Lerner,
G.Burgy,
A.Ehler,
C.Bissantz,
R.Jakob-Roetne,
R.Paulini,
O.Allemann,
H.Tissot,
D.Grunstein,
M.Stihle,
F.Diederich,
M.G.Rudolph.
Catechol-O-Methyltransferase in Complex with Substituted 3'-Deoxyribose Bisubstrate Inhibitors Acta Crystallogr.,Sect.D V. 68 253 2012.
ISSN: ISSN 0907-4449
PubMed: 22349227
DOI: 10.1107/S0907444912001138
Page generated: Sun Jul 21 01:17:46 2024
|