Atomistry » Chlorine » PDB 3nw8-3o69 » 3nwb
Atomistry »
  Chlorine »
    PDB 3nw8-3o69 »
      3nwb »

Chlorine in PDB 3nwb: Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group

Enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group

All present enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group:
2.1.1.6;

Protein crystallography data

The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb was solved by A.Ehler, D.Schlatter, M.Stihle, J.Benz, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.42 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.389, 55.351, 79.356, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 16.4

Other elements in 3nwb:

The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group (pdb code 3nwb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 1 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl223

b:16.1
occ:1.00
H A:SER72 2.6 17.6 0.5
H A:SER72 2.6 17.6 0.5
H A:VAL42 2.6 15.7 0.5
H A:VAL42 2.6 15.7 0.5
HB3 A:TYR71 2.8 16.9 1.0
HA A:ASN41 2.8 16.4 1.0
HG13 A:VAL42 2.8 18.4 0.5
HB3 A:SER72 3.1 19.4 0.5
O A:HOH275 3.1 22.3 1.0
O A:HOH236 3.1 15.3 1.0
HG A:SER72 3.2 21.1 0.5
OG A:SER72 3.2 17.6 0.5
HB2 A:SER72 3.3 19.7 0.5
N A:SER72 3.3 14.7 1.0
N A:VAL42 3.4 13.1 1.0
HG12 A:VAL42 3.4 21.2 0.5
HD1 A:TYR71 3.5 16.8 1.0
OG A:SER72 3.5 17.1 0.5
HD21 A:ASN41 3.6 20.9 1.0
CA A:ASN41 3.6 13.7 1.0
CB A:SER72 3.7 16.1 0.5
CB A:SER72 3.7 16.4 0.5
HG A:SER72 3.7 20.5 0.5
HB3 A:ASN41 3.7 19.1 1.0
CB A:TYR71 3.7 14.1 1.0
CG1 A:VAL42 3.8 15.4 0.5
HB A:VAL42 3.8 18.3 0.5
H A:TYR71 3.9 16.4 1.0
C A:ASN41 4.0 13.2 1.0
HG22 A:VAL42 4.0 21.5 0.5
CA A:SER72 4.1 15.0 0.5
CA A:SER72 4.1 15.1 0.5
OD2 A:ASP141 4.1 13.0 1.0
HB3 A:TYR68 4.1 17.5 1.0
CB A:ASN41 4.2 15.9 1.0
HG12 A:VAL42 4.2 18.4 0.5
O A:HOH242 4.2 19.7 1.0
CD1 A:TYR71 4.2 14.0 1.0
C A:TYR71 4.2 14.8 1.0
CG1 A:VAL42 4.2 17.7 0.5
HG11 A:VAL42 4.2 18.4 0.5
HB2 A:TYR71 4.3 16.9 1.0
N A:TYR71 4.3 13.6 1.0
CA A:TYR71 4.3 15.0 1.0
O A:ALA67 4.3 15.2 1.0
CB A:VAL42 4.3 15.3 0.5
O A:HOH336 4.4 12.6 1.0
ND2 A:ASN41 4.4 17.4 1.0
HD2 A:TYR68 4.4 18.4 1.0
CG A:TYR71 4.4 13.8 1.0
CA A:VAL42 4.5 13.1 0.5
HA A:SER72 4.5 18.1 0.5
HA A:SER72 4.5 18.0 0.5
CA A:VAL42 4.5 13.2 0.5
O A:MET40 4.5 14.1 1.0
CB A:VAL42 4.5 15.6 0.5
HB2 A:SER72 4.5 19.4 0.5
HB3 A:SER72 4.6 19.7 0.5
HG11 A:VAL42 4.6 21.2 0.5
CG2 A:VAL42 4.7 17.9 0.5
HE2 A:PHE139 4.7 18.1 1.0
N A:ASN41 4.8 13.4 1.0
H A:GLY70 4.8 17.9 1.0
CG A:ASN41 4.8 17.6 1.0
HA A:VAL42 4.9 15.8 0.5
HA A:VAL42 4.9 15.9 0.5
H A:CYS69 4.9 17.8 1.0
HB2 A:ASN41 5.0 19.1 1.0
HG13 A:VAL42 5.0 21.2 0.5

Chlorine binding site 2 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 2 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl224

b:18.7
occ:1.00
H A:TYR200 2.5 15.7 1.0
H A:ALA45 2.7 18.5 1.0
H A:ASP44 2.8 17.8 1.0
O A:HOH348 3.1 34.6 1.0
HA A:GLU199 3.1 14.2 1.0
O A:HOH269 3.2 21.8 1.0
N A:TYR200 3.3 13.1 1.0
N A:ASP44 3.4 14.8 1.0
HB3 A:ASP44 3.4 22.6 1.0
N A:ALA45 3.5 15.4 1.0
HA3 A:GLY43 3.5 16.3 1.0
HA A:TYR200 3.7 16.6 1.0
HB2 A:ALA45 3.7 20.1 1.0
O A:HOH234 3.7 13.5 1.0
HD1 A:TYR200 3.7 20.0 1.0
HB3 A:ALA45 3.8 20.1 1.0
CA A:GLU199 4.0 11.8 1.0
CD1 A:TYR200 4.0 16.7 1.0
CA A:ASP44 4.1 15.4 1.0
CA A:TYR200 4.1 13.8 1.0
CB A:ALA45 4.1 16.7 1.0
C A:GLY43 4.1 13.7 1.0
CB A:ASP44 4.2 18.8 1.0
C A:GLU199 4.2 11.4 1.0
CA A:GLY43 4.2 13.6 1.0
C A:ASP44 4.3 14.8 1.0
HE1 A:TYR200 4.3 21.4 1.0
HA2 A:GLY43 4.3 16.3 1.0
CE1 A:TYR200 4.3 17.8 1.0
CA A:ALA45 4.4 14.9 1.0
HB2 A:ASP44 4.5 22.6 1.0
HB2 A:GLU199 4.5 14.6 1.0
CG A:TYR200 4.7 15.4 1.0
O A:LEU198 4.7 12.0 1.0
O A:HOH423 4.7 46.8 1.0
H A:MET201 4.7 15.8 0.8
H A:MET201 4.7 15.8 0.2
CB A:GLU199 4.8 12.2 1.0
HB3 A:GLU199 4.8 14.6 1.0
H A:LYS46 4.9 14.8 1.0
O A:HOH295 4.9 31.2 1.0
O A:HOH350 5.0 30.7 1.0
HA A:ALA45 5.0 17.9 1.0
N A:GLU199 5.0 11.7 1.0

Chlorine binding site 3 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 3 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl225

b:61.8
occ:1.00
H A:GLY83 2.8 43.9 1.0
HH22 A:ARG85 2.9 40.9 1.0
HH12 A:ARG85 3.0 39.2 1.0
N A:GLY83 3.6 36.6 1.0
HZ3 A:LYS111 3.6 41.4 1.0
HA A:PRO82 3.7 46.2 1.0
NH2 A:ARG85 3.7 34.0 1.0
NH1 A:ARG85 3.8 32.6 1.0
HA2 A:GLY83 3.9 41.9 1.0
HB3 A:PRO82 4.0 47.2 1.0
HZ1 A:LYS111 4.1 41.4 1.0
NZ A:LYS111 4.3 34.5 1.0
CZ A:ARG85 4.3 32.1 1.0
CA A:GLY83 4.3 34.9 1.0
CA A:PRO82 4.4 38.5 1.0
HH21 A:ARG85 4.4 40.9 1.0
C A:PRO82 4.4 38.4 1.0
HH11 A:ARG85 4.5 39.2 1.0
HG2 A:LYS111 4.6 32.5 1.0
CB A:PRO82 4.7 39.3 1.0
HE2 A:LYS111 4.8 39.0 1.0
HZ2 A:LYS111 4.9 41.4 1.0
HA3 A:GLY83 4.9 41.9 1.0
HG3 A:LYS111 5.0 32.5 1.0

Reference:

M.Ellermann, C.Lerner, G.Burgy, A.Ehler, C.Bissantz, R.Jakob-Roetne, R.Paulini, O.Allemann, H.Tissot, D.Grunstein, M.Stihle, F.Diederich, M.G.Rudolph. Catechol-O-Methyltransferase in Complex with Substituted 3'-Deoxyribose Bisubstrate Inhibitors Acta Crystallogr.,Sect.D V. 68 253 2012.
ISSN: ISSN 0907-4449
PubMed: 22349227
DOI: 10.1107/S0907444912001138
Page generated: Sat Dec 12 09:58:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy