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Chlorine in PDB 3nyh: Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity

Enzymatic activity of Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity

All present enzymatic activity of Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity, PDB code: 3nyh was solved by N.Pandey, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.57 / 1.77
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.231, 79.837, 77.548, 90.00, 102.67, 90.00
R / Rfree (%) 18.8 / 23.6

Other elements in 3nyh:

The structure of Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Bromine (Br) 1 atom
Iodine (I) 15 atoms
Iron (Fe) 1 atom
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity (pdb code 3nyh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity, PDB code: 3nyh:

Chlorine binding site 1 out of 1 in 3nyh

Go back to Chlorine Binding Sites List in 3nyh
Chlorine binding site 1 out of 1 in the Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl598

b:26.5
occ:1.00
O A:HOH1150 3.2 23.4 1.0
O A:HOH1134 3.2 40.1 1.0
CE2 A:PHE254 3.6 44.1 1.0
CE1 A:PHE381 3.7 19.8 1.0
CD2 A:PHE254 3.8 40.5 1.0
CZ A:PHE381 3.9 20.0 1.0
CA A:ARG255 4.0 19.8 1.0
CG A:ARG255 4.1 21.2 1.0
O A:PHE254 4.3 24.4 1.0
CB A:ARG255 4.4 18.3 1.0
O A:HOH1166 4.4 28.4 1.0
CG A:PRO424 4.6 28.0 1.0
C A:PHE254 4.8 24.8 1.0
N A:ARG255 4.8 21.2 1.0
CZ A:PHE254 4.8 44.9 1.0
C A:ARG255 4.9 18.1 1.0
O A:ARG255 5.0 18.7 1.0
CB A:GLU258 5.0 16.7 1.0

Reference:

N.Pandey, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Lactoperoxidase Complexed Simultaneously with Thiocyanate Ion, Iodide Ion, Bromide Ion, Chloride Ion Through the Substrate Diffusion Channel Reveals A Preferential Queue of the Inorganic Substrates Towards the Distal Heme Cavity To Be Published.
Page generated: Sat Dec 12 09:58:36 2020

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