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Chlorine in PDB 5to1: HTRA2 Exposed (L266R, F303A) Mutant

Enzymatic activity of HTRA2 Exposed (L266R, F303A) Mutant

All present enzymatic activity of HTRA2 Exposed (L266R, F303A) Mutant:
3.4.21.108;

Protein crystallography data

The structure of HTRA2 Exposed (L266R, F303A) Mutant, PDB code: 5to1 was solved by M.Merski, P.J.Barbosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.80 / 1.69
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 84.180, 84.180, 126.772, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 19.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the HTRA2 Exposed (L266R, F303A) Mutant (pdb code 5to1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the HTRA2 Exposed (L266R, F303A) Mutant, PDB code: 5to1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5to1

Go back to Chlorine Binding Sites List in 5to1
Chlorine binding site 1 out of 2 in the HTRA2 Exposed (L266R, F303A) Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of HTRA2 Exposed (L266R, F303A) Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:57.0
occ:1.00
O A:HOH629 3.3 35.3 1.0
N A:GLU217 3.3 33.4 1.0
CA A:TYR216 3.8 32.2 1.0
CD2 A:TYR216 3.9 46.9 1.0
C A:TYR216 4.1 36.3 1.0
CB A:TYR216 4.1 33.0 1.0
CB A:GLU217 4.2 40.3 1.0
O A:HOH752 4.2 69.5 1.0
CA A:GLU217 4.3 35.8 1.0
O A:GLU217 4.3 40.7 1.0
CG A:TYR216 4.5 37.8 1.0
O A:THR215 4.7 40.0 1.0
C A:GLU217 4.8 34.2 1.0
CE2 A:TYR216 4.9 49.8 1.0

Chlorine binding site 2 out of 2 in 5to1

Go back to Chlorine Binding Sites List in 5to1
Chlorine binding site 2 out of 2 in the HTRA2 Exposed (L266R, F303A) Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of HTRA2 Exposed (L266R, F303A) Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:40.9
occ:1.00
OH A:TYR428 2.9 40.4 1.0
O A:HOH747 3.2 42.3 1.0
N A:GLY363 3.2 32.7 1.0
N A:ILE362 3.3 34.8 1.0
CD1 A:TYR361 3.7 33.3 1.0
CE1 A:TYR428 3.8 36.5 1.0
CZ A:TYR428 3.8 38.2 1.0
CG1 A:ILE362 3.8 37.8 1.0
CA A:GLY363 4.0 38.2 1.0
CA A:TYR361 4.0 31.9 1.0
C A:ILE362 4.1 32.3 1.0
CA A:ILE362 4.1 32.6 1.0
C A:TYR361 4.1 33.4 1.0
N A:VAL364 4.2 35.4 1.0
CE1 A:TYR361 4.3 31.8 1.0
CG A:TYR361 4.3 36.1 1.0
CB A:PRO225 4.4 29.8 1.0
O A:HOH613 4.5 43.0 1.0
CB A:ILE362 4.6 35.9 1.0
CB A:TYR361 4.6 35.6 1.0
O A:VAL364 4.6 35.6 1.0
C A:GLY363 4.7 40.5 1.0
O A:ARG360 4.8 44.7 1.0
O A:HOH614 4.9 33.6 1.0

Reference:

M.Merski, C.Moreira, R.M.Abreu, M.J.Ramos, P.A.Fernandes, L.M.Martins, P.J.B.Pereira, S.Macedo-Ribeiro. Molecular Motion Regulates the Activity of the Mitochondrial Serine Protease HTRA2. Cell Death Dis V. 8 E3119 2017.
ISSN: ISSN 2041-4889
PubMed: 29022916
DOI: 10.1038/CDDIS.2017.487
Page generated: Fri Jul 26 17:34:26 2024

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