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Chlorine in PDB 3o2r: Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni

Enzymatic activity of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni

All present enzymatic activity of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni:
3.1.26.3;

Protein crystallography data

The structure of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni, PDB code: 3o2r was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 1.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.451, 61.552, 118.093, 90.00, 90.09, 90.00
R / Rfree (%) 13.3 / 16.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni (pdb code 3o2r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni, PDB code: 3o2r:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3o2r

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Chlorine binding site 1 out of 4 in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl225

b:23.0
occ:1.00
 O A:HOH231 3.0 30.3 1.0
O A:HOH823 3.0 31.3 0.5
O A:HOH226 3.1 10.9 1.0
NE A:ARG38 3.3 13.6 1.0
O A:HOH527 3.4 28.1 1.0
CE1 A:HIS23 3.5 18.1 1.0
CB A:ARG38 3.7 10.3 1.0
NE2 A:HIS23 3.8 17.2 1.0
CD A:ARG38 3.9 13.0 1.0
CZ B:PHE56 3.9 10.9 1.0
CE1 B:PHE56 4.0 10.6 1.0
O A:HOH253 4.2 21.1 1.0
CG A:LEU39 4.2 10.2 1.0
O B:HOH801 4.2 38.1 1.0
ND1 A:HIS23 4.3 18.4 1.0
CZ A:ARG38 4.3 12.6 1.0
NH2 A:ARG38 4.3 15.2 1.0
CG A:ARG38 4.4 11.2 1.0
O A:HOH861 4.5 53.5 1.0
N A:LEU39 4.5 8.8 1.0
CD1 A:LEU39 4.7 11.2 1.0
CD2 A:HIS23 4.7 16.9 1.0
CA A:ARG38 4.8 9.2 1.0
O A:HOH232 4.8 14.9 1.0
O A:ASN35 4.9 11.2 1.0
CD2 A:LEU39 4.9 11.7 1.0
C A:ARG38 4.9 8.8 1.0
CE2 B:PHE56 4.9 11.4 1.0
CG A:HIS23 5.0 15.4 1.0

Chlorine binding site 2 out of 4 in 3o2r

Go back to Chlorine Binding Sites List in 3o2r
Chlorine binding site 2 out of 4 in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl225

b:20.2
occ:1.00
 O B:HOH408 2.9 28.2 1.0
O B:HOH233 3.1 10.1 1.0
NE B:ARG38 3.2 14.2 1.0
CE1 B:HIS23 3.3 14.7 1.0
O B:HOH313 3.7 33.1 1.0
NE2 B:HIS23 3.7 14.4 1.0
CB B:ARG38 3.8 9.8 1.0
CZ A:PHE56 3.8 11.0 1.0
CD B:ARG38 3.8 13.6 1.0
ND1 B:HIS23 4.0 14.3 1.0
CE1 A:PHE56 4.1 10.8 1.0
CG B:LEU39 4.1 8.5 1.0
CZ B:ARG38 4.2 13.4 1.0
NH2 B:ARG38 4.3 14.1 1.0
O B:HOH257 4.3 15.2 1.0
CG B:ARG38 4.4 12.8 1.0
CD1 B:LEU39 4.5 10.2 1.0
N B:LEU39 4.6 8.7 1.0
CD2 B:HIS23 4.6 13.8 1.0
O A:HOH951 4.6 25.9 0.5
CG B:HIS23 4.8 12.9 1.0
CD2 B:LEU39 4.8 9.9 1.0
CE2 A:PHE56 4.9 11.2 1.0
CA B:ARG38 4.9 8.9 1.0
O B:HOH239 4.9 12.8 1.0
O B:ASN35 4.9 9.8 1.0
C B:ARG38 5.0 8.5 1.0

Chlorine binding site 3 out of 4 in 3o2r

Go back to Chlorine Binding Sites List in 3o2r
Chlorine binding site 3 out of 4 in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl225

b:22.1
occ:1.00
 O C:HOH298 2.9 25.3 1.0
O C:HOH227 3.0 10.4 1.0
O D:HOH767 3.2 24.0 0.4
NE C:ARG38 3.2 13.2 1.0
O C:HOH551 3.4 27.9 1.0
CE1 C:HIS23 3.5 18.3 1.0
CB C:ARG38 3.6 10.1 1.0
NE2 C:HIS23 3.8 16.0 1.0
CD C:ARG38 3.8 12.3 1.0
CZ D:PHE56 3.9 10.7 1.0
O C:HOH255 4.0 15.4 0.6
CE1 D:PHE56 4.0 10.8 1.0
O D:HOH965 4.2 15.2 1.0
CZ C:ARG38 4.2 12.4 1.0
CG C:LEU39 4.3 9.6 1.0
NH2 C:ARG38 4.3 15.4 1.0
ND1 C:HIS23 4.3 19.1 1.0
CG C:ARG38 4.4 9.8 1.0
O C:HOH255 4.5 14.2 0.4
N C:LEU39 4.5 8.2 1.0
CD1 C:LEU39 4.7 11.2 1.0
CD2 C:HIS23 4.7 15.5 1.0
CA C:ARG38 4.8 8.9 1.0
O C:HOH239 4.8 14.7 1.0
O C:ASN35 4.8 11.1 1.0
CD2 C:LEU39 4.9 10.4 1.0
C C:ARG38 4.9 8.5 1.0
CE2 D:PHE56 5.0 11.5 1.0

Chlorine binding site 4 out of 4 in 3o2r

Go back to Chlorine Binding Sites List in 3o2r
Chlorine binding site 4 out of 4 in the Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl225

b:19.6
occ:1.00
 O D:HOH376 2.9 28.4 1.0
O D:HOH230 3.1 9.2 1.0
NE D:ARG38 3.2 12.6 1.0
CE1 D:HIS23 3.4 13.3 1.0
NE2 D:HIS23 3.7 13.7 1.0
CB D:ARG38 3.7 9.7 1.0
O D:HOH255 3.8 31.4 1.0
CZ C:PHE56 3.8 9.8 1.0
CD D:ARG38 3.8 12.5 1.0
CE1 C:PHE56 4.1 9.8 1.0
ND1 D:HIS23 4.1 14.1 1.0
CG D:LEU39 4.2 8.8 1.0
CZ D:ARG38 4.2 12.7 1.0
NH2 D:ARG38 4.3 13.4 1.0
O D:HOH264 4.3 15.9 1.0
CG D:ARG38 4.4 10.8 1.0
CD1 D:LEU39 4.5 9.8 1.0
N D:LEU39 4.6 8.1 1.0
CD2 D:HIS23 4.6 12.7 1.0
O D:HOH891 4.6 46.3 1.0
CG D:HIS23 4.8 11.9 1.0
CD2 D:LEU39 4.8 9.6 1.0
CE2 C:PHE56 4.8 10.5 1.0
CA D:ARG38 4.9 8.8 1.0
O D:HOH239 4.9 13.2 1.0
O D:ASN35 4.9 9.1 1.0
C D:ARG38 5.0 8.1 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (Rnc) From Campylobacter Jejuni. To Be Published.
Page generated: Sun Jul 21 01:22:11 2024

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